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@bowang-lab

WangLab @ U of T

BoWang's Lab at University of Toronto

Popular repositories Loading

  1. MedSAM MedSAM Public

    Segment Anything in Medical Images

    Jupyter Notebook 3.7k 500

  2. scGPT scGPT Public

    Jupyter Notebook 1.3k 267

  3. U-Mamba U-Mamba Public

    U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

    Python 839 83

  4. MedRAX MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray - ICML 2025

    Python 639 134

  5. Graph-Mamba Graph-Mamba Public

    Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces

    Python 295 35

  6. BioReason BioReason Public

    BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model

    Jupyter Notebook 252 36

Repositories

Showing 10 of 56 repositories
  • Orthrus Public

    Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.

    Python 68 MIT 13 4 0 Updated Jul 15, 2025
  • MedRAX2 Public Forked from bowang-lab/MedRAX

    MedRAX-2

    Python 1 Apache-2.0 135 2 1 Updated Jul 15, 2025
  • AMOS-MM-Solution Public

    Solution to the AMOS-MM challenge

    Python 9 MIT 0 1 0 Updated Jul 14, 2025
  • MedSAM2 Public

    MedSAM2: Segment Anything in 3D Medical Images and Videos

    Python 243 Apache-2.0 54 0 1 Updated Jul 11, 2025
  • trl Public Forked from huggingface/trl

    Train transformer language models with reinforcement learning.

    Python 0 Apache-2.0 2,054 0 0 Updated Jul 10, 2025
  • scGPT Public
    Jupyter Notebook 1,271 MIT 267 144 8 Updated Jul 9, 2025
  • MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray - ICML 2025

    Python 639 Apache-2.0 134 4 6 Updated Jul 5, 2025
  • genomic-FM Public
    Python 27 3 1 0 Updated Jun 16, 2025
  • BioReason Public

    BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model

    Jupyter Notebook 252 Apache-2.0 36 4 0 Updated Jun 14, 2025
  • vLLM Public Forked from vllm-project/vllm

    A high-throughput and memory-efficient inference and serving engine for LLMs

    Python 0 Apache-2.0 8,807 0 0 Updated Jun 13, 2025
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