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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 43 9

  2. docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 2 1

Repositories

Showing 10 of 83 repositories
  • nmdc-server Public

    Data portal client and server for NMDC.

    Python 12 0 131 20 Updated Aug 6, 2025
  • nmdc-mcp Public
    Python 1 2 11 1 Updated Aug 6, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 43 CC0-1.0 9 379 (1 issue needs help) 16 Updated Aug 6, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    Python 2 0 3 1 Updated Aug 6, 2025
  • Python 1 MIT 2 54 8 Updated Aug 6, 2025
  • nmdc-aggregator Public

    Scripts that periodically aggregate data related to KEGG search

    Python 0 0 1 0 Updated Aug 6, 2025
  • nmdc-field-notes Public

    Mobile app for metadata collection on the go

    TypeScript 2 0 28 1 Updated Aug 6, 2025
  • metaAssembly Public

    Workflow for metagenome assembly

    WDL 4 4 2 0 Updated Aug 5, 2025
  • nmdc-edge Public

    Web-based interface to the NMDC EDGE platform

    JavaScript 4 1 81 (1 issue needs help) 1 Updated Aug 5, 2025
  • kaiko_metaproteome Public

    Generates sample-specific protein databases from raw peptide spectra

    Python 3 BSD-2-Clause 3 5 1 Updated Aug 5, 2025

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