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104 repositories

dandi-archive
Public
EMBER - DANDI API server and Web app
Python
•14•2•4•2•Updated Jun 25, 2025Jun 25, 2025
dotmotif
Public
A performant, powerful query framework to search for network motifs
neo4j networkx graph-database connectomics query-language connectome motif-discovery graph-matching motifs subgraph-isomorphism
Python
•
Apache License 2.0
•10•86•4•0•Updated Jun 19, 2025Jun 19, 2025
neuprint-cm
Public
Dockerfile
•1•0•0•0•Updated Jun 17, 2025Jun 17, 2025
neuPrintHTTP
Public
Implements connectomics REST interface
Go
•2•0•0•0•Updated Jun 17, 2025Jun 17, 2025
dandi-infrastructure
Public
A repository to collect docs/issues on DANDI project infrastructure for Ember
HCL
•
Apache License 2.0
•8•0•7•3•Updated Jun 17, 2025Jun 17, 2025
bossdb-rag-chatbot
Public
A Language Interface to the BossDB Ecosystem
Python
•
Apache License 2.0
•0•1•5•3•Updated Jun 17, 2025Jun 17, 2025
neuvue-app
Public
MICrONS Proofreading App
JavaScript
•
Apache License 2.0
•2•1•16•1•Updated Jun 11, 2025Jun 11, 2025
motifstudio
Public
motifs subgraph-isomorphism bossdb grand-graphs grandiso
TypeScript
•
Apache License 2.0
•0•1•4•0•Updated Jun 3, 2025Jun 3, 2025
bossVR
Public
Syglass + BossDB
Python
•
Apache License 2.0
•1•1•0•0•Updated Jun 2, 2025Jun 2, 2025
substrate
Public archive
A high-speed three.js substrate for visualizing biofidelic data
visualization threejs data-science jupyter graphics jupyter-notebook data-visualization 3d jhuapl pytri
JavaScript
•
Apache License 2.0
•1•5•7•0•Updated May 28, 2025May 28, 2025
grand
Public
Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
sql serverless graph graph-algorithms graphs neptune dynamodb networkx graph-theory graph-database
Python
•
Apache License 2.0
•8•109•6•0•Updated May 25, 2025May 25, 2025
grand-cypher
Public
Implementation of the Cypher language for searching NetworkX graphs
networkx networks cypher grand python neo4j graph graph-database
Python
•
Apache License 2.0
•14•110•12•1•Updated May 23, 2025May 23, 2025
BBQS-EMBER-web
Public
BBQS EMBER Archive web app
Vue
•1•1•8•1•Updated May 9, 2025May 9, 2025
ffn
Public
Flood-Filling Networks for instance segmentation in 3d volumes.
Python
•
Apache License 2.0
•100•0•0•0•Updated Apr 16, 2025Apr 16, 2025
BBQS-EMBER-Data-Model
Public
Core repository for the EMBER ARCHIVE
Mermaid
•0•0•9•2•Updated Apr 8, 2025Apr 8, 2025
neuvue-manage
Public
Resources and documentation to create and manage proofreading tasks on NeuVue
Jupyter Notebook
•
Apache License 2.0
•1•2•0•0•Updated Apr 7, 2025Apr 7, 2025
vsvi2precomputed
Public
Script to convert VSVI (used in VAST) image datasets to precomputed volumes
Python
•
Apache License 2.0
•0•1•3•0•Updated Mar 31, 2025Mar 31, 2025
open-data-registry
Public
A registry of publicly available datasets on AWS
Python
•
Apache License 2.0
•1k•0•0•0•Updated Mar 28, 2025Mar 28, 2025
campfire
Public
Complementary Automated Methods for Proofreading
Python
•0•0•0•0•Updated Mar 27, 2025Mar 27, 2025
neuvue-client
Public
python client for neuvue-queue
Python
•
Apache License 2.0
•1•3•1•0•Updated Mar 10, 2025Mar 10, 2025
dandi-docs
Public
EMBER-DANDI Documentation
16•0•3•1•Updated Feb 18, 2025Feb 18, 2025
neuroglancer
Public
WebGL-based viewer for volumetric data
TypeScript
•
Apache License 2.0
•320•1•0•1•Updated Feb 12, 2025Feb 12, 2025
grandiso-rust
Public
Rust
•
Apache License 2.0
•0•0•1•0•Updated Jan 29, 2025Jan 29, 2025
bossdb-collab-notebooks
Public
Collection of public notebooks for all projects on BossDB
Jupyter Notebook
•
Apache License 2.0
•0•1•2•0•Updated Jan 24, 2025Jan 24, 2025
npyjs
Public
Read numpy .npy files in JavaScript
nodejs numpy 3d jhuapl javascript npy npy-files
JavaScript
•
Apache License 2.0
•22•87•8•2•Updated Jan 13, 2025Jan 13, 2025
neuromorpholib
Public
Python
•
Apache License 2.0
•1•4•1•0•Updated Jan 10, 2025Jan 10, 2025
neuvue-queue
Public
TypeScript
•
Apache License 2.0
•0•1•5•0•Updated Dec 13, 2024Dec 13, 2024
bossdb-kasthuri-challenge
Public
Segmentation challenge for the Kasthuri et. al 2015 dataset
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
grandlite
Public
A SQLite-like tool for querying graphs from the command-line using graph query languages in in-memory Python.
neo4j command-line graph sqlite graphs in-memory graph-database cypher opencypher graph-query
Python
•
Apache License 2.0
•0•6•1•0•Updated Dec 4, 2024Dec 4, 2024
pyreconstruct-download
Public
Tiny website + example code for downloading a subvolume for annotation in PyReconstruct
Python
•0•0•6•0•Updated Nov 12, 2024Nov 12, 2024