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@vanheeringen-lab

vanheeringen-lab

Repository of the group of Simon van Heeringen @ Radboud University

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  1. genomepy Public

    genes and genomes at your fingertips

    Python 395 38

  2. gimmemotifs Public

    Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

    Python 120 35

  3. seq2science Public

    Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

    Python 163 28

  4. scepia Public

    Single Cell Epigenome-based Inference of Activity

    Jupyter Notebook 19 2

  5. ANANSE Public

    Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

    Python 83 15

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