Nextstrain
Real-time tracking of pathogen evolution
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- cli Public
The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
nextstrain/cli’s past year of commit activity - .github Public
nextstrain/.github’s past year of commit activity - nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
nextstrain/nextclade’s past year of commit activity
