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rbf.go
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// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"fmt"
"io"
"math"
"os"
"strings"
"sync"
"github.com/featurebasedb/featurebase/v3/rbf"
rbfcfg "github.com/featurebasedb/featurebase/v3/rbf/cfg"
"github.com/featurebasedb/featurebase/v3/roaring"
txkey "github.com/featurebasedb/featurebase/v3/short_txkey"
"github.com/featurebasedb/featurebase/v3/storage"
"github.com/pkg/errors"
)
// RbfDBWrapper wraps an *rbf.DB
type RbfDBWrapper struct {
path string
db *rbf.DB
cfg *rbfcfg.Config
reg *rbfDBRegistrar
muDb sync.Mutex
openTx map[*RBFTx]bool
// make Close() idempotent, avoiding panic on double Close()
closed bool
//DeleteEmptyContainer bool // needed for roaring compat?
doAllocZero bool
}
func (w *RbfDBWrapper) Path() string {
return w.path
}
func (w *RbfDBWrapper) SetHolder(h *Holder) {
// don't need it at the moment
//w.h = h
}
func (w *RbfDBWrapper) CleanupTx(tx Tx) {
r := tx.(*RBFTx)
r.mu.Lock()
if r.done {
r.mu.Unlock()
return
}
r.done = true
r.mu.Unlock()
// try not to hold r.mu while locking w.muDb
w.muDb.Lock()
delete(w.openTx, r)
w.muDb.Unlock()
}
// rbfDBRegistrar also allows opening the same path twice to
// result in sharing the same open database handle, and
// thus the same transactional guarantees.
type rbfDBRegistrar struct {
mu sync.Mutex
mp map[*RbfDBWrapper]bool
path2db map[string]*RbfDBWrapper
rbfConfig *rbfcfg.Config
}
func (r *rbfDBRegistrar) SetRBFConfig(cfg *rbfcfg.Config) {
r.mu.Lock()
defer r.mu.Unlock()
r.rbfConfig = cfg
}
func (r *rbfDBRegistrar) Size() int {
r.mu.Lock()
defer r.mu.Unlock()
nmp := len(r.mp)
npa := len(r.path2db)
if nmp != npa {
panic(fmt.Sprintf("nmp=%v, vs npa=%v", nmp, npa))
}
return nmp
}
var globalRbfDBReg *rbfDBRegistrar = newRbfDBRegistrar()
func newRbfDBRegistrar() *rbfDBRegistrar {
return &rbfDBRegistrar{
mp: make(map[*RbfDBWrapper]bool),
path2db: make(map[string]*RbfDBWrapper),
}
}
// register each rbf.DB created, so we dedup and can
// can clean them up. This is called by OpenDBWrapper() while
// holding the r.mu.Lock, since it needs to atomically
// check the registry and make a new instance only
// if one does not exist for its path, and otherwise
// return the existing instance.
func (r *rbfDBRegistrar) unprotectedRegister(w *RbfDBWrapper) {
r.mp[w] = true
r.path2db[w.path] = w
}
// unregister removes w from r
func (r *rbfDBRegistrar) unregister(w *RbfDBWrapper) {
r.mu.Lock()
delete(r.mp, w)
delete(r.path2db, w.path)
r.mu.Unlock()
}
// OpenDBWrapper opens the database in the path directory
// without deleting any prior content. Any
// database directory will have the "-rbf" suffix.
//
// OpenDBWrapper will check the registry and make a new instance only
// if one does not exist for its path. Otherwise it returns
// the existing instance. This insures only one RbfDBWrapper
// per bpath in this pilosa node.
func (r *rbfDBRegistrar) OpenDBWrapper(path string, doAllocZero bool, cfg *storage.Config) (DBWrapper, error) {
r.mu.Lock()
defer r.mu.Unlock()
w, ok := r.path2db[path]
if ok {
// creates the effect of having only one DB open per pilosa node.
return w, nil
}
if r.rbfConfig == nil {
r.rbfConfig = rbfcfg.NewDefaultConfig()
r.rbfConfig.DoAllocZero = doAllocZero
r.rbfConfig.FsyncEnabled = cfg.FsyncEnabled
}
db := rbf.NewDB(path, r.rbfConfig)
w = &RbfDBWrapper{
reg: r,
path: path,
db: db,
doAllocZero: doAllocZero,
openTx: make(map[*RBFTx]bool),
cfg: r.rbfConfig,
}
r.unprotectedRegister(w)
err := db.Open()
if err != nil {
panic(fmt.Sprintf("cannot open rbfDB at path '%v': '%v'", path, err))
}
return w, nil
}
type RBFTx struct {
// initialIndex is only a debugging aid. Transactions
// can cross indexes. It can be left empty without consequence.
initialIndex string
tx *rbf.Tx
o Txo
Db *RbfDBWrapper
done bool
mu sync.Mutex // protect done as it changes state
}
func (tx *RBFTx) DBPath() string {
return tx.tx.DBPath()
}
func (tx *RBFTx) Type() string {
return RBFTxn
}
func (tx *RBFTx) Rollback() {
tx.tx.Rollback()
tx.Db.CleanupTx(tx)
}
func (tx *RBFTx) Commit() (err error) {
err = tx.tx.Commit()
tx.Db.CleanupTx(tx)
return err
}
func (tx *RBFTx) RoaringBitmap(index, field, view string, shard uint64) (*roaring.Bitmap, error) {
return tx.tx.RoaringBitmap(rbfName(index, field, view, shard))
}
func (tx *RBFTx) Container(index, field, view string, shard uint64, key uint64) (*roaring.Container, error) {
return tx.tx.Container(rbfName(index, field, view, shard), key)
}
func (tx *RBFTx) PutContainer(index, field, view string, shard uint64, key uint64, c *roaring.Container) error {
return tx.tx.PutContainer(rbfName(index, field, view, shard), key, c)
}
func (tx *RBFTx) RemoveContainer(index, field, view string, shard uint64, key uint64) error {
return tx.tx.RemoveContainer(rbfName(index, field, view, shard), key)
}
// Add sets all the a bits hot in the specified fragment.
func (tx *RBFTx) Add(index, field, view string, shard uint64, a ...uint64) (changeCount int, err error) {
return tx.addOrRemove(index, field, view, shard, false, a...)
}
// Remove clears all the specified a bits in the chosen fragment.
func (tx *RBFTx) Remove(index, field, view string, shard uint64, a ...uint64) (changeCount int, err error) {
return tx.addOrRemove(index, field, view, shard, true, a...)
}
// Removed clears the specified bits and tells you which ones it actually removed.
func (tx *RBFTx) Removed(index, field, view string, shard uint64, a ...uint64) (changed []uint64, err error) {
if len(a) == 0 {
return a, nil
}
name := rbfName(index, field, view, shard)
// this special case can/should possibly go away, except that it
// turns out to be by far the most common case, and we need to know
// there's at least two items to simplify the check-sorted thing.
if len(a) == 1 {
hi, lo := highbits(a[0]), lowbits(a[0])
rc, err := tx.tx.Container(name, hi)
if err != nil {
return a[:0], errors.Wrap(err, "failed to retrieve container")
}
if rc.N() == 0 {
return a[:0], nil
}
rc1, chng := rc.Remove(lo)
if !chng {
return a[:0], nil
}
if rc1.N() == 0 {
err = tx.tx.RemoveContainer(name, hi)
} else {
err = tx.tx.PutContainer(name, hi, rc1)
}
if err != nil {
return a[:0], err
}
return a[:1], nil
}
changeCount := 0
changed = a
var lastHi uint64 = math.MaxUint64 // highbits is always less than this starter.
var rc *roaring.Container
var hi uint64
var lo uint16
for i, v := range a {
hi, lo = highbits(v), lowbits(v)
if hi != lastHi {
// either first time through, or changed to a different container.
// do we need put the last updated container now?
if i > 0 {
// not first time through, write what we got.
if rc == nil || rc.N() == 0 {
err = tx.tx.RemoveContainer(name, lastHi)
if err != nil {
return a[:0], errors.Wrap(err, "failed to remove container")
}
} else {
err = tx.tx.PutContainer(name, lastHi, rc)
if err != nil {
return a[:0], errors.Wrap(err, "failed to put container")
}
}
}
// get the next container
rc, err = tx.tx.Container(name, hi)
if err != nil {
return a[:0], errors.Wrap(err, "failed to retrieve container")
}
} // else same container, keep adding bits to rct.
chng := false
rc, chng = rc.Remove(lo)
if chng {
changed[changeCount] = v
changeCount++
}
lastHi = hi
}
// write the last updates.
if rc == nil || rc.N() == 0 {
err = tx.tx.RemoveContainer(name, hi)
if err != nil {
return a[:0], errors.Wrap(err, "failed to remove container")
}
} else {
err = tx.tx.PutContainer(name, hi, rc)
if err != nil {
return a[:0], errors.Wrap(err, "failed to put container")
}
}
return changed[:changeCount], nil
}
// sortedParanoia is a flag to enable a check for unsorted inputs to addOrRemove,
// which is expensive in practice and only really useful occasionally.
const sortedParanoia = false
func (tx *RBFTx) addOrRemove(index, field, view string, shard uint64, remove bool, a ...uint64) (changeCount int, err error) {
if len(a) == 0 {
return 0, nil
}
name := rbfName(index, field, view, shard)
// this special case can/should possibly go away, except that it
// turns out to be by far the most common case, and we need to know
// there's at least two items to simplify the check-sorted thing.
if len(a) == 1 {
hi, lo := highbits(a[0]), lowbits(a[0])
rc, err := tx.tx.Container(name, hi)
if err != nil {
return 0, errors.Wrap(err, "failed to retrieve container")
}
if remove {
if rc.N() == 0 {
return 0, nil
}
rc1, chng := rc.Remove(lo)
if !chng {
return 0, nil
}
if rc1.N() == 0 {
err = tx.tx.RemoveContainer(name, hi)
} else {
err = tx.tx.PutContainer(name, hi, rc1)
}
if err != nil {
return 0, err
}
return 1, nil
} else {
rc2, chng := rc.Add(lo)
if !chng {
return 0, nil
}
err = tx.tx.PutContainer(name, hi, rc2)
if err != nil {
return 0, err
}
return 1, nil
}
}
var lastHi uint64 = math.MaxUint64 // highbits is always less than this starter.
var rc *roaring.Container
var hi uint64
var lo uint16
// we can accept sorted either ascending or descending.
sign := a[1] - a[0]
prev := a[0] - sign
sign >>= 63
for i, v := range a {
// This check is noticably expensive (a few percent in some
// use cases) and as long as it passes occasionally it's probably
// not important to run it all the time, and anyway panic is
// not a good choice outside of testing.
if sortedParanoia {
if (v-prev)>>63 != sign {
explain := fmt.Sprintf("addOrRemove: %d < %d != %d < %d", v, prev, a[1], a[0])
panic(explain)
}
if v == prev {
explain := fmt.Sprintf("addOrRemove: %d twice", v)
panic(explain)
}
}
prev = v
hi, lo = highbits(v), lowbits(v)
if hi != lastHi {
// either first time through, or changed to a different container.
// do we need put the last updated container now?
if i > 0 {
// not first time through, write what we got.
if remove && (rc == nil || rc.N() == 0) {
err = tx.tx.RemoveContainer(name, lastHi)
if err != nil {
return 0, errors.Wrap(err, "failed to remove container")
}
} else {
err = tx.tx.PutContainer(name, lastHi, rc)
if err != nil {
return 0, errors.Wrap(err, "failed to put container")
}
}
}
// get the next container
rc, err = tx.tx.Container(name, hi)
if err != nil {
return 0, errors.Wrap(err, "failed to retrieve container")
}
} // else same container, keep adding bits to rct.
chng := false
// rc can be nil before, and nil after, in both Remove/Add below.
// The roaring container add() and remove() methods handle this.
if remove {
rc, chng = rc.Remove(lo)
} else {
rc, chng = rc.Add(lo)
}
if chng {
changeCount++
}
lastHi = hi
}
// write the last updates.
if remove {
if rc == nil || rc.N() == 0 {
err = tx.tx.RemoveContainer(name, hi)
if err != nil {
return 0, errors.Wrap(err, "failed to remove container")
}
} else {
err = tx.tx.PutContainer(name, hi, rc)
if err != nil {
return 0, errors.Wrap(err, "failed to put container")
}
}
} else {
if rc == nil || rc.N() == 0 {
panic("there should be no way to have an empty bitmap AFTER an Add() operation")
}
err = tx.tx.PutContainer(name, hi, rc)
if err != nil {
return 0, errors.Wrap(err, "failed to put container")
}
}
return
}
func (tx *RBFTx) Contains(index, field, view string, shard uint64, v uint64) (exists bool, err error) {
return tx.tx.Contains(rbfName(index, field, view, shard), v)
}
func (tx *RBFTx) ContainerIterator(index, field, view string, shard uint64, key uint64) (citer roaring.ContainerIterator, found bool, err error) {
return tx.tx.ContainerIterator(rbfName(index, field, view, shard), key)
}
func (tx *RBFTx) Count(index, field, view string, shard uint64) (uint64, error) {
return tx.tx.Count(rbfName(index, field, view, shard))
}
func (tx *RBFTx) Max(index, field, view string, shard uint64) (uint64, error) {
return tx.tx.Max(rbfName(index, field, view, shard))
}
func (tx *RBFTx) Min(index, field, view string, shard uint64) (uint64, bool, error) {
return tx.tx.Min(rbfName(index, field, view, shard))
}
// CountRange returns the count of hot bits in the start, end range on the fragment.
// roaring.countRange counts the number of bits set between [start, end).
func (tx *RBFTx) CountRange(index, field, view string, shard uint64, start, end uint64) (n uint64, err error) {
return tx.tx.CountRange(rbfName(index, field, view, shard), start, end)
}
func (tx *RBFTx) OffsetRange(index, field, view string, shard uint64, offset, start, end uint64) (*roaring.Bitmap, error) {
return tx.tx.OffsetRange(rbfName(index, field, view, shard), offset, start, end)
}
func (tx *RBFTx) ImportRoaringBits(index, field, view string, shard uint64, rit roaring.RoaringIterator, clear bool, log bool, rowSize uint64) (changed int, rowSet map[uint64]int, err error) {
return tx.tx.ImportRoaringBits(rbfName(index, field, view, shard), rit, clear, log, rowSize)
}
func (tx *RBFTx) ApplyFilter(index, field, view string, shard uint64, ckey uint64, filter roaring.BitmapFilter) (err error) {
err = tx.tx.ApplyFilter(rbfName(index, field, view, shard), ckey, filter)
return errors.Wrap(err, fmt.Sprintf("applying filter for index %s, field %s, view %s, shard %d", index, field, view, shard))
}
func (tx *RBFTx) ApplyRewriter(index, field, view string, shard uint64, ckey uint64, filter roaring.BitmapRewriter) (err error) {
err = tx.tx.ApplyRewriter(rbfName(index, field, view, shard), ckey, filter)
return errors.Wrap(err, fmt.Sprintf("applying rewriter for index %s, field %s, view %s, shard %d", index, field, view, shard))
}
func (tx *RBFTx) GetSortedFieldViewList(idx *Index, shard uint64) (fvs []txkey.FieldView, err error) {
return tx.tx.GetSortedFieldViewList()
}
func (tx *RBFTx) GetFieldSizeBytes(index, field string) (uint64, error) {
return tx.tx.GetSizeBytesWithPrefix(string(txkey.FieldPrefix(index, field)))
}
// SnapshotReader returns a reader that provides a snapshot of the current database.
func (tx *RBFTx) SnapshotReader() (io.Reader, error) {
return tx.tx.SnapshotReader()
}
// rbfName returns a NULL-separated key used for identifying bitmap maps in RBF.
func rbfName(index, field, view string, shard uint64) string {
return string(txkey.Prefix(index, field, view, shard))
}
// rbfFieldPrefix returns a prefix for field keys in RBF.
func rbfFieldPrefix(index, field string) string {
//return fmt.Sprintf("%s\x00%s\x00", index, field)
return string(txkey.FieldPrefix(index, field))
}
func (w *RbfDBWrapper) HasData() (has bool, err error) {
w.muDb.Lock()
defer w.muDb.Unlock()
return w.db.HasData(false) // false => any prior attempt at write means we "have data"
}
func (w *RbfDBWrapper) DeleteField(index, field, fieldPath string) error {
w.muDb.Lock()
defer w.muDb.Unlock()
if err := os.RemoveAll(fieldPath); err != nil {
return errors.Wrap(err, "removing directory")
}
tx, err := w.db.Begin(true)
if err != nil {
return err
}
defer tx.Rollback()
if err := tx.DeleteBitmapsWithPrefix(rbfFieldPrefix(index, field)); err != nil {
return err
}
return tx.Commit()
}
func (w *RbfDBWrapper) DeleteIndex(indexName string) error {
if strings.Contains(indexName, "'") {
return fmt.Errorf("error: bad indexName `%v` in RbfDBWrapper.DeleteIndex() call: indexName cannot contain apostrophes/single quotes", indexName)
}
prefix := txkey.IndexOnlyPrefix(indexName)
w.muDb.Lock()
defer w.muDb.Unlock()
tx, err := w.db.Begin(true)
if err != nil {
return err
}
defer tx.Rollback()
if err := tx.DeleteBitmapsWithPrefix(string(prefix)); err != nil {
return err
}
return tx.Commit()
}
func (w *RbfDBWrapper) Close() error {
w.muDb.Lock()
defer w.muDb.Unlock()
if !w.closed {
w.reg.unregister(w)
w.closed = true
}
return w.db.Close()
}
// needed to handle the special case on reload, the close method unregisters the wrapper and all that is
// required is the backing file get reloaded
func (w *RbfDBWrapper) CloseDB() error {
w.muDb.Lock()
defer w.muDb.Unlock()
w.closed = true
return w.db.Close()
}
func (w *RbfDBWrapper) OpenDB() error {
w.muDb.Lock()
defer w.muDb.Unlock()
err := w.db.Open()
if err != nil {
return err
}
w.closed = false
return nil
}
func (w *RbfDBWrapper) NewTx(write bool, initialIndex string, o Txo) (_ Tx, err error) {
tx, err := w.db.Begin(write)
if err != nil {
return nil, err
}
rtx := &RBFTx{
tx: tx,
initialIndex: initialIndex,
o: o,
Db: w,
}
w.muDb.Lock()
w.openTx[rtx] = true
w.muDb.Unlock()
return rtx, nil
}
func (w *RbfDBWrapper) DeleteFragment(index, field, view string, shard uint64, frag interface{}) error {
tx, err := w.db.Begin(true)
if err != nil {
return err
}
defer tx.Rollback()
err = tx.DeleteBitmapsWithPrefix(rbfName(index, field, view, shard))
if err != nil {
return err
}
return tx.Commit()
}
func (w *RbfDBWrapper) OpenListString() (r string) {
return "rbf OpenListString not implemented yet"
}