ANTs: .sh commands do not work

[sceptri]

Nixpkgs version

• Unstable (25.05)

Describe the bug

When using ANTs (e.g. nix-shell -p ants), the non .sh commands work seemingly fine, but .sh throw an error:

[nix-shell:~]$ antsRegistrationSyNQuick.sh 
/nix/store/gq9f8s768a70y0mzjbk4bj73mh9j41im-ANTs-2.5.4/bin/.antsRegistrationSyNQuick.sh-wrapped: line 113: basename: command not found
/nix/store/gq9f8s768a70y0mzjbk4bj73mh9j41im-ANTs-2.5.4/bin/.antsRegistrationSyNQuick.sh-wrapped: line 113: basename: command not found
/nix/store/gq9f8s768a70y0mzjbk4bj73mh9j41im-ANTs-2.5.4/bin/.antsRegistrationSyNQuick.sh-wrapped: line 113: cat: command not found

Steps to reproduce

1. add ANTs to environment (nix-shell -p ants)
2. run e.g. antsRegistrationSyNQuick.sh

Expected behaviour

It runs (and prints help for example)

Screenshots

No response

Relevant log output

/nix/store/gq9f8s768a70y0mzjbk4bj73mh9j41im-ANTs-2.5.4/bin/.antsRegistrationSyNQuick.sh-wrapped: line 113: basename: command not found
/nix/store/gq9f8s768a70y0mzjbk4bj73mh9j41im-ANTs-2.5.4/bin/.antsRegistrationSyNQuick.sh-wrapped: line 113: basename: command not found
/nix/store/gq9f8s768a70y0mzjbk4bj73mh9j41im-ANTs-2.5.4/bin/.antsRegistrationSyNQuick.sh-wrapped: line 113: cat: command not found

Additional context

No response

System metadata

• system: "x86_64-linux"
• host os: Linux 6.13.1, NixOS, 24.11 (Vicuna), 24.11.714127.f5a32fa27df9
• multi-user?: yes
• sandbox: yes
• version: nix-env (Nix) 2.24.12
• channels(root): "home-manager-24.11.tar.gz, nixos-24.11, nixos-hardware, nixos-unstable"
• nixpkgs: /nix/var/nix/profiles/per-user/root/channels/nixos

Notify maintainers

@bcdarwin

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