satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
Easy interactive web applications with R
Accurate sample inference from amplicon data with single nucleotide resolution
R toolkit for the analysis of single-cell chromatin data
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Inferring CNV from Single-Cell RNA-Seq
🎓 A collection of interactive courses for the swirl R package.
Survival Analysis and Visualization
Simple Features for R
Make Complex Heatmaps
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
'ggplot2' Based Publication Ready Plots
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Fast, sensitive and accurate integration of single-cell data with Harmony
📊 A universal enrichment tool for interpreting omics data
RStan, the R interface to Stan
Tools to make an R developer's life easier
Enhancing {ggplot2} plots with statistical analysis 📊📣
Community-provided extensions to Seurat