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@CompOmics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 212 52

  2. DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 65 22

  3. ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 58 19

  4. compomics-utilities Public

    Open source Java library for computational proteomics

    Java 33 17

  5. peptide-shaker Public

    Interpretation of proteomics identification results

    Java 48 18

  6. searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 44 15

Repositories

Showing 10 of 96 repositories
  • ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 212 Apache-2.0 52 14 1 Updated Jun 19, 2025
  • EUPA_2025_DIA Public Forked from RobbinBouwmeester/ASMS_2024_DIA

    Analysis of limitations of DIA data analysis for EuPA 2025 presentation

    Jupyter Notebook 0 Apache-2.0 1 0 0 Updated Jun 16, 2025
  • lesSDRF Public
    Jupyter Notebook 6 Apache-2.0 8 5 1 Updated Jun 12, 2025
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    Python 27 Apache-2.0 10 7 (2 issues need help) 5 Updated Jun 11, 2025
  • mumble Public

    Finding the perfect modification for your mass shift

    Python 4 Apache-2.0 1 1 3 Updated Jun 11, 2025
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 58 Apache-2.0 19 16 3 Updated Jun 10, 2025
  • DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 65 Apache-2.0 21 0 1 Updated Jun 6, 2025
  • molcraft Public

    Deep Learning on Molecules.

    Python 0 MIT 0 0 0 Updated Jun 2, 2025
  • intro-to-deep-learning Public

    Practical introduction to neural networks with Pytorch and Lightning

    Jupyter Notebook 1 CC-BY-4.0 0 0 0 Updated May 20, 2025
  • compomics.github.io Public

    Compomics github website.

    SCSS 0 MIT 1 0 0 Updated May 15, 2025
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