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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

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Repositories

Showing 10 of 23 repositories
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Python 1,785 BSD-3-Clause 507 57 (2 issues need help) 15 Updated Jul 23, 2025
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 171 GPL-3.0 67 11 1 Updated Jul 21, 2025
  • Kilosort Public

    Fast spike sorting with drift correction

    Python 542 GPL-3.0 270 15 2 Updated Jul 18, 2025
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    CSS 0 0 0 0 Updated Jul 17, 2025
  • Jupyter Notebook 3 GPL-3.0 2 0 0 Updated Jul 15, 2025
  • minimodel Public

    minimodels!

    Jupyter Notebook 2 GPL-3.0 2 0 0 Updated Jul 14, 2025
  • zhong-et-al-2025 Public

    code to make figures from Zhong et al, 2025

    Jupyter Notebook 7 GPL-3.0 2 0 0 Updated Jul 6, 2025
  • suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 396 GPL-3.0 257 123 (1 issue needs help) 13 Updated Jun 11, 2025
  • neuropop Public

    analysis tools for large-scale neural recordings

    Python 14 GPL-3.0 2 0 0 Updated Apr 4, 2025
  • rastermap Public

    a visualization method for neural data

    Python 230 GPL-3.0 51 9 0 Updated Apr 4, 2025

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