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Automatic cross CI once docker container has been built

enhancementNew feature or requestNew feature or request

Status: Open.

#242 In nf-core/deepmodeloptim;

· mathysgrapotte opened on Mar 24, 2025

Collect all versions and pass them correctly to MultiQC

enhancementNew feature or requestNew feature or request

Status: Open.

#238 In nf-core/deepmodeloptim;

· luisas opened on Mar 20, 2025

create toolsheet for preprocessing

Status: Open.

#224 In nf-core/deepmodeloptim;

· suzannejin opened on Feb 19, 2025

[enhancement] do .yaml config parsing and puting into channels in groovy instead of python

enhancementNew feature or requestNew feature or request

Status: Open.

#205 In nf-core/deepmodeloptim;

· mathysgrapotte opened on Oct 29, 2024

Turn torch_tune into an nf-core module

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#201 In nf-core/deepmodeloptim;

· JoseEspinosa opened on Oct 23, 2024

Turn stimulus_transform_csv into an nf-core module

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#200 In nf-core/deepmodeloptim;

· JoseEspinosa opened on Oct 23, 2024

Turn stimulus_split_csv into an nf-core module

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#199 In nf-core/deepmodeloptim;

· JoseEspinosa opened on Oct 23, 2024

Turn check_torch_model into an nf-core module

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#197 In nf-core/deepmodeloptim;

· JoseEspinosa opened on Oct 23, 2024

[future][discussion] deal with data located in files

enhancementNew feature or requestNew feature or request

Status: Open.

#196 In nf-core/deepmodeloptim;

· mathysgrapotte opened on Oct 23, 2024

[future][discussion] how to incorporate external modules ?

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#195 In nf-core/deepmodeloptim;

· mathysgrapotte opened on Oct 23, 2024

Turn the following modules into nf-core modules

enhancementNew feature or requestNew feature or request

Status: Open.

#194 In nf-core/deepmodeloptim;

· mathysgrapotte opened on Oct 23, 2024

Fix nf-test after nf-core migration

bugSomething isn't workingSomething isn't working

good first issueGood for newcomersGood for newcomers

Status: Open.

#193 In nf-core/deepmodeloptim;

· JoseEspinosa opened on Oct 23, 2024