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Create hex logo for the pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

Enhancement

#76 In nf-core/lncpipe;

· ctuni opened on Mar 24, 2025

Add the necessary genome/reference "preparation" steps

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#75 In nf-core/lncpipe;

· ctuni opened on Mar 24, 2025

Add fastq preprocessing to the pipeline

Status: Open.

Task

#74 In nf-core/lncpipe;

· Emeerdink opened on Mar 24, 2025

(Role) lncpipe.nf Stitcher

help wantedExtra attention is neededExtra attention is needed

Status: Open.

Task

#69 In nf-core/lncpipe;

· Emeerdink opened on Mar 24, 2025

Keep modules.json up to date

Status: Open.

Task

#67 In nf-core/lncpipe;

· Emeerdink opened on Mar 23, 2025

Move Identify_novel_lncRNA_with_criterions process to modules

Status: Open.

Task

#65 In nf-core/lncpipe;

· Emeerdink opened on Mar 22, 2025

Add HISAT2/EXTRACTSPLICESITES module

Status: Open.

Task

#60 In nf-core/lncpipe;

· ctuni opened on Mar 20, 2025

Add STRINGTIE modules

Status: Open.

Task

#58 In nf-core/lncpipe;

· ctuni opened on Mar 20, 2025

Add GFFCOMPARE module

Status: Open.

Task

#57 In nf-core/lncpipe;

· ctuni opened on Mar 20, 2025

Add GGFREAD module

Status: Open.

Task

#56 In nf-core/lncpipe;

· ctuni opened on Mar 20, 2025

Add bedops/gtf2bed module

Status: Open.

Task

#54 In nf-core/lncpipe;

· ctuni opened on Mar 20, 2025

Add HTSEQ/COUNT module

Status: Open.

Task

#53 In nf-core/lncpipe;

· ctuni opened on Mar 20, 2025