Repositories list

• cloudos-cli

  Public
  Python library and Command Line Interface for interacting with Lifebit Applications

  Python

  •

  GNU General Public License v3.0

  •0•47•55•3•Updated Jun 26, 2025Jun 26, 2025

• spammer-nf

  Public template
  A stampede of processes at your fingertips

  Nextflow

  •7•0•0•4•Updated Jun 4, 2025Jun 4, 2025

• nextflow

  Public
  A DSL for data-driven computational pipelines

  Groovy

  •

  Apache License 2.0

  •698•0•0•4•Updated Apr 16, 2025Apr 16, 2025

• design-tokens

  Public
  CSS

  •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

• numba-py-debug-test-nf

  Public
  Python

  •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• action-cloudos-cli

  Public template
  Github action to programmatically interact with the Lifebit CloudOS platform using the official API client cloudos-cli

  ciapi-clientlifebit-cloudos

  Shell

  •

  MIT License

  •2•27•11•0•Updated Jan 21, 2025Jan 21, 2025

• cloudos-nf-testing

  Public
  throwaway behaviour tests of cloudos nextflow

  Nextflow

  •1•1•0•0•Updated Jan 16, 2025Jan 16, 2025

• cloudos-cli-training-resources

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• exomiser-pipeline-nf

  Public
  Nextflow pipeline for - https://github.com/exomiser/Exomiser

  Python

  •0•1•1•0•Updated Nov 7, 2024Nov 7, 2024

• terraform-public-modules

  Public
  Terraform public modules

  HCL

  •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• cromwell

  Public
  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Scala

  •

  BSD 3-Clause "New" or "Revised" License

  •369•0•0•7•Updated Sep 6, 2024Sep 6, 2024

• fedai-scGPT-cell-type

  Public
  Source code for base scGPT cell type training model for federated learning

  Jupyter Notebook

  •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• h3agwas

  Public template
  GWAS Pipeline for H3Africa

  Python

  •

  Other

  •66•0•5•1•Updated Aug 19, 2024Aug 19, 2024

• flatironQA

  Public
  A nextflow pipeline that orchestrates Flatiron internal data QA

  CSS

  •6•0•0•0•Updated Jul 29, 2024Jul 29, 2024

• CNest-nf

  Public
  Nextflow pipeline for CNest -

  Nextflow

  •4•0•0•0•Updated Apr 26, 2024Apr 26, 2024

• CDISC2CSV

  Public
  A nextflow pipeline that Converts CDISC XPT & XML files to CSV

  Nextflow

  •6•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• template4users

  Public
  A nextflow pipeline template for Users

  Nextflow

  •6•2•0•0•Updated Apr 17, 2024Apr 17, 2024

• diagnostic-check-nf

  Public
  Nextflow

  •0•0•0•2•Updated Oct 23, 2023Oct 23, 2023

• bam2cram

  Public
  Nextflow

  •1•0•0•3•Updated Oct 23, 2023Oct 23, 2023

• images

  Public
  Repository to store images/gifs to use as links in other repos/tutorials etc

  0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

• demo-from-template

  Public
  CSS

  •0•0•0•2•Updated Sep 25, 2023Sep 25, 2023

• twas

  Public template
  Pipeline for performing transcriptome-wide association analysis

  CSS

  •0•1•0•3•Updated Sep 25, 2023Sep 25, 2023

• gel-data-queries-resources

  Public
  Notebooks and scripts for querying programmatically source and OMOP data

  gelcdmomop

  Jupyter Notebook

  •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

• template-nf

  Public template
  Lifebit curated Nextflow pipeline template repository

  CSS

  •1•2•0•2•Updated Sep 11, 2023Sep 11, 2023

• test-nf

  Public
  JavaScript

  •0•0•0•1•Updated Sep 11, 2023Sep 11, 2023

• MungeSumstats

  Public
  Rapid standardisation and quality control of GWAS or QTL summary statistics

  R

  •18•0•0•0•Updated Aug 23, 2023Aug 23, 2023

• workflow-1-with-cloudos-cli

  Public
  Nextflow

  •0•0•0•0•Updated Aug 18, 2023Aug 18, 2023

• workflow-1

  Public
  Shell

  •0•0•0•0•Updated Aug 17, 2023Aug 17, 2023

• workflow-2

  Public
  Nextflow

  •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• ETL-LambdaBuilder

  Public
  CDM Builder leveraging AWS Lambda

  C#

  •

  Apache License 2.0

  •16•0•0•0•Updated Aug 8, 2023Aug 8, 2023