1000 Genomes Project Metadata R Package

A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8

Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

GTM and t-SNE classification and clustering of 1000 Genomes Project populations

📙 Explore 1000 Genomes variant data with JavaScript.

A PBWT-based light index for UK Biobank scale genotype data.

A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

GWAS Pre-Processing Pipeline

Find risk snp in the LD region of GWAS snps by convolutional neural network

Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation

Predicting 1000 Genomes population using PCA and a random forest classifier

Map 1000genomes location to a worldmap

a Nextflow pipeline for generating imputation reference panels using 1000 Genomes and HGDP data to enhance variant calling in Blended Genome Exome sequencing

Concordance Validation across Experiments

The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.

A Python script that generate population genotype frequency file from 1000G data

echoverse module: LD downloading and processing

An extendable parser for vcf files written in C++

Visualizing Linkage Disequilibrium using 1000 Genomes Data

Keep up to date with ONT R10 files from 1KG