Cytofin-an R package for CyTOF data integration

Accurate and Efficient Simulation of CyTOF data

🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.

Analysis and visualisation single-cell proteomic data (CyTOF)

Fast auto-cleanup of CyTOF data

Lite version of the tool to analyze and visualize CyTOF data (still under development)

Very fast method to read number of events from some / all FCS files in a directory

Opens two or more FCS files and creates new files that contain only the Channels common to all.

R Script to plot the average event rate in flow or mass cytometry (FCS) files

Source code for the At-Risk RA work

Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.

Batch effect correction and automated gating of CyTOF data

This repository contains all scripts used for data analysis in the study "Comparative single-cell immune responses in peripheral blood and lymph node of immunized SARS-CoV-2 challenged macaques." The scripts process, analyze, and visualize single-cell immune data, comparing peripheral blood and lymph node responses across vaccine groups.