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@ClavelLab

The Clavel lab

This is the official GitHub account for the research group of Prof. Thomas Clavel.

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  1. Protologger Public

    Forked from thh32/Protologger

    Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

    Python

  2. maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    R 2

  3. Benchmarking-shallow-Metagenomics Public

    Forked from NicoleTreichel/Benchmarking-shallow-Metagenomics

    Shell

  4. MiMiC2 Public

    Forked from thh32/MiMiC2

    A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.

    Python

Repositories

Showing 10 of 16 repositories
  • github-repo-stats Public

    Statistics aggregation for Github repositories for NFDI4Microbiota KPI

    0 1 0 0 Updated Apr 27, 2025
  • hibc Public

    Shiny application to display data and metadata for The Human Intestinal Bacterial Collection (HiBC)

    R 0 0 0 0 Updated Apr 25, 2025
  • pocpbenchmark_manuscript Public

    Code and manuscript for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

    TeX 0 GPL-3.0 0 0 0 Updated Apr 11, 2025
  • Benchmarking-shallow-Metagenomics Public Forked from NicoleTreichel/Benchmarking-shallow-Metagenomics
    Shell 0 MIT 1 0 0 Updated Mar 31, 2025
  • Protologger Public Forked from thh32/Protologger

    Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

    Python 0 3 0 0 Updated Mar 31, 2025
  • pocpbenchmark Public

    Nextflow workflow for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

    Nextflow 0 MIT 0 0 0 Updated Mar 20, 2025
  • MiMiC2 Public Forked from thh32/MiMiC2

    A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.

    Python 0 GPL-2.0 2 0 0 Updated Mar 18, 2025
  • genome-assembly Public

    A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab

    Python 1 MIT 1 0 0 Updated Mar 4, 2025
  • maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    R 2 GPL-3.0 0 4 (1 issue needs help) 0 Updated Feb 21, 2025
  • consprot Public

    High-throughput delineation of bacterial genera

    Nextflow 0 0 0 0 Updated Nov 15, 2024
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