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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 10 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. npg_qc npg_qc Public

    QC checks and metrics for Illumina NGS data

    Perl 6 18

Repositories

Showing 10 of 84 repositories
  • npg_irods Public

    Tools for managing HTS (BAM and CRAM) format files in iRODS.

    Perl 2 GPL-3.0 17 17 3 Updated Apr 11, 2025
  • npg_notifications Public
    Python 0 4 2 4 Updated Apr 10, 2025
  • baton Public

    iRODS client programs and API

    C 19 GPL-2.0 19 11 0 Updated Apr 10, 2025
  • npg_porch_cli Public

    A command-line client to enable communication with the npg_porch API.

    Python 0 4 1 0 Updated Apr 8, 2025
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    Go 2 GPL-3.0 4 4 1 Updated Apr 8, 2025
  • extendo Public

    An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

    Go 0 GPL-3.0 3 0 2 Updated Apr 7, 2025
  • p4 Public

    Process and Pipe Pipeline Panacea

    Perl 3 14 9 9 Updated Apr 7, 2025
  • sqyrrl Public

    Sqyrrl - an HTTP server for files hosted in iRODS

    Go 1 GPL-3.0 3 2 1 Updated Apr 7, 2025
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    Python 1 GPL-3.0 8 1 1 Updated Apr 7, 2025
  • partisan Public

    A Python client API for iRODS

    Python 1 GPL-3.0 4 0 0 Updated Apr 4, 2025
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