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Pull requests: nf-core/modules

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Pull requests list

Swap sequencetools/pileupcaller to nf-test
#8359 opened Apr 23, 2025 by SPPearce Loading…
1
bump shinyngs
#8358 opened Apr 23, 2025 by atrigila Loading…
17 tasks
Migrate khmer/normalizebymedian to nf-test nf-test
#8357 opened Apr 23, 2025 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
2
Fix cellrangerarc/mkfastq gz stub
#8354 opened Apr 23, 2025 by ignatiusm Loading…
17 tasks
1
1
nf-test migration for cellrangerarc/mkfastq
#8353 opened Apr 22, 2025 by ignatiusm • Draft
17 tasks
1
Migrate cellrangeratac/mkref to nf-test nf-test
#8352 opened Apr 22, 2025 by max-laurent Loading…
5 of 17 tasks
1
17
Update GNU
#8349 opened Apr 22, 2025 by DLBPointon Loading…
@DLBPointon
1
Update differential subworkflows to take list of contrasts as input
#8346 opened Apr 22, 2025 by suzannejin Loading…
12 of 20 tasks
1
DO NOT MERGE: Testing singularity GPU runners
#8332 opened Apr 17, 2025 by mashehu Loading…
Fix prettier linting everywhere
#8323 opened Apr 16, 2025 by jfy133 Loading…
17 tasks
12
longstitch module, tests
#8312 opened Apr 15, 2025 by nschan Loading…
7
srst2/srst2 to nf-test
#8301 opened Apr 14, 2025 by famosab Loading…
17 tasks
1
2
jupyternotebook to nf-test
#8300 opened Apr 14, 2025 by famosab Loading…
17 tasks
1
2
Added module picard MeanQualityByCycle
#8289 opened Apr 14, 2025 by mikefeixu Loading…
17 tasks done
Added module picard CollectAlignmentSummaryMetrics
#8287 opened Apr 13, 2025 by mikefeixu Loading…
17 tasks done
7
Add eider modules new module Adding a new module WIP Work in progress
#8284 opened Apr 11, 2025 by heuermh • Draft
14 of 17 tasks
1
SENTIEON_BWAMEM license path
#8256 opened Apr 9, 2025 by edmundmiller • Draft
@edmundmiller
Use pre-commit in fix-linting action
#8250 opened Apr 8, 2025 by mashehu Loading…
Earlgrey module WIP
#8249 opened Apr 8, 2025 by cintiaoi Loading…
10 of 17 tasks
fix: nf-test in strelka Ready for Review
#8241 opened Apr 8, 2025 by famosab Loading…
1 of 17 tasks
1
5
Update modules meta-schema.json
#8226 opened Apr 7, 2025 by mirpedrol Loading…
Add new module called rundbcan and subcommands(database, cazymeannotation, easycgc, easysubstrate)
#8216 opened Apr 4, 2025 by Xinpeng021001 Loading…
12 of 17 tasks
50
adds ClairSTO
#8214 opened Apr 4, 2025 by robert-a-forsyth Loading…
12 of 17 tasks
ClairS
#8213 opened Apr 4, 2025 by robert-a-forsyth Loading…
12 of 17 tasks
1
Yleaf module added @3.3.0
#8210 opened Apr 4, 2025 by trianglegrrl • Draft
17 tasks
1
5
ProTip! Follow long discussions with comments:>50.