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Cloufield/GWASTutorial
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(base) chenlx@PheniX:~/GWASTutorial/01_Dataset$ ./download_sampledata.sh Archive: 1KG.EAS.auto.snp.norm.nodup.split.rare002.common015.missing.zip End-of-central-directory signature not found. Either this ...
  • LXC2
  • 1
  • Opened 
    on Apr 21
  • #12

Cloufield/GWASTutorial
pip installation error

Thanks for your amazing package. Have y all encountered this error when installing tinytimer (from pyensembl)? Collecting tinytimer (from pyensembl==2.2.3- gwaslab) Using cached tinytimer-0.0.0.tar.gz ...
  • bwaxse
  • 1
  • Opened 
    on Apr 9
  • #10

Cloufield/GWASTutorial
Different from the original plink doc

First, I want to sincerely thank you for providing such a detailed and helpful document. Your efforts in compiling and sharing this information are greatly appreciated, and it has been incredibly useful ...
  • wbszhu
  • 1
  • Opened 
    on Jan 6
  • #9

Cloufield/GWASTutorial
GCTA-GREML: the X^t * V^-1 * X matrix is not invertible.

Hi Cloufield team, it was a struggle for a GWAS newbie like me that finally went to the SNP-Heritability estimation by GCTA-GREML section. Now I have been stuck here for a few days in an error with the ...
  • Truongphikt
  • 2
  • Opened 
    on Oct 19, 2024
  • #7

Cloufield/GWASTutorial
some website is not working

hello, the website in 08_LDSC for reference resource is not working how to solve this issue? 2024-06-24 16:00:50-- https://storage.googleapis.com/broad-alkesgroup-public/LDSCORE/w_hm3.snplist.bz2 Resolving ...
  • FrederickGri
  • 2
  • Opened 
    on Jun 24, 2024
  • #6

Cloufield/GWASTutorial
Plink file for calculating LD matrix not found

Thanks for creating this amazing tutorial! In the finemapping tutoral, the script calculate_ldr.sh calculates the LD matrix from the plink file ../01_Dataset/1KG.EAS.auto.snp.norm.nodup.split.maf005.thinp020. ...
  • Habush
  • 18
  • Opened 
    on Apr 16, 2024
  • #4

Cloufield/GWASTutorial
sampledata

链接：https://pan.baidu.com/s/1eumkxNt_e3bJO_4jJBZUMw?pwd=6688 提取码：6688 提供一个百度网盘链接
  • lihaicheng7003
  • 1
  • Opened 
    on Jul 26, 2023
  • #2
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