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1 parent f16e98a commit cc55e1bCopy full SHA for cc55e1b
snpmatch/core/infer.py
@@ -18,7 +18,7 @@ def __init__(self,
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num_markers,
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chromosome_size,
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avg_depth = 1.5,
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- delta_het_parents = 0.99,
+ fraction_homo_parents = 0.99,
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avg_sites_segregating = 0.01,
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base_error = 0.0001,
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recomb_rate = 3.3,
@@ -29,7 +29,7 @@ def __init__(self,
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self.params['num_markers'] = num_markers
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self.params['avg_depth'] = avg_depth
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### fraction of sites parental genomes are heterozygous
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- self.params['delta_het_parents'] = delta_het_parents
+ self.params['delta_het_parents'] = fraction_homo_parents
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### fraction of sites which are segregating between parents
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self.params['avg_sites_segregating'] = avg_sites_segregating
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### sequencing error rate
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