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Gregor-Mendel-Institute/gwaR
Make plot_linkage use facetting instead of y values.

This is trivial, but i am too lazy to do it, basically create a facetting variable (face_var) (levels: Linkage, HIGH, LOW, MODERATE, MODIFIER, Annotation), and replace the y coordinates with 0 for all ...
enhancement
  • nschan
  • Opened 
    on Nov 7, 2019
  • #6

Gregor-Mendel-Institute/gwaR
Implement LD?

Implement a way to calculate linkage of SNPs. Currently my best idea would be to fetch variant data for a specific region for all accessions that are in the dataset from 1001genomes, by expanding the region ...
  • nschan
  • Opened 
    on Oct 29, 2019
  • #5

Gregor-Mendel-Institute/gwaR
Expand intersect_phenotype_snp to deal with specific models

The idea is to expand this function to include a way to specify a grouping variable, to be able to properly use it with specific limix output
  • nschan
  • Opened 
    on Oct 25, 2019
  • #2

Gregor-Mendel-Institute/gwaR
No Documentation

Please provide documentation
documentation
  • nschan
  • Opened 
    on Oct 24, 2019
  • #1
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