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1. bgcflow bgcflow Public

   Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)

   Python 42 9

2. bgcflow_dbt-duckdb bgcflow_dbt-duckdb Public

   An ELT framework based on DBT and DuckDB to process BGCFlow output tables

   Shell 2 1

3. bgcflow_wrapper bgcflow_wrapper Public

   A snakemake wrapper and utility tools command line interface for BGCFlow.

   Python 2 1

4. chatBGC chatBGC Public

   Ask questions about biosynthetic gene clusters in your genome dataset using Retrieval-Augmented Generation (RAG) from a BGCFlow run.

   Python 2 1

5. AbsPresTree AbsPresTree Public

   Forked from OmkarSaMo/AbsPresTree

   Create a phylogenetic tree with an absence/presence matrix of biosynthetic gene clusters

   Python 1

6. snakemake-UmetaFlow snakemake-UmetaFlow Public

   Created for testing the metabolomics pipeline through snakemake

   Python 1 1