Snitkin-Lab-Umich
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Showing 10 of 46 repositories
- cauris_panaroo Public
Simple scripts for converting the output of QCD pipelines to be compatible with Panaroo and Orthofinder
- cauris_persvade_sv Public
A snakemake pipeline for quickly running PerSVade's structural variant calling on C auris samples
- Nanosake Public Forked from alipirani88/Nanosake
A Snakemake workflow to basecall, quality control and assemble Nanopore data.
- cauris_dotplot Public
A set of simple scripts for generating synteny dot plots from C auris assemblies
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