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This Java code uses NCBI's mpiblast to assign taxonomic status to short-read sequences. A voting algorithm summarizes the top results.

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Assigning taxonomic status to short read sequences

Authors: Matt Horton,

This Java program uses a local NCBI nt/nr database to assign taxonomic status to short-read sequences. This code extends marta to use NCBI's mpiblast.

The current version is 1.0. Suggestions and code contributions are welcome.

The main dependencies are: Java MySQL

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This Java code uses NCBI's mpiblast to assign taxonomic status to short-read sequences. A voting algorithm summarizes the top results.

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