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Creating a new module (seq2HLA) fails ungracefully

bugSomething isn't workingSomething isn't working

Status: Open.

#3719 In nf-core/tools;

· FriederikeHanssen opened on Aug 22, 2025

test-datasets: URLs broken by formatting with <code>list --generate-dl-urls</code>

Status: Open.

#3718 In nf-core/tools;

· mpampuch opened on Aug 21, 2025

Centralize and synchronize GHAs

enhancement

Status: Open.

#3716 In nf-core/tools;

· maxulysse opened on Aug 20, 2025

Lint for incorrect <code>.mix(XXX.out.versions.first())</code> subworklow calls

enhancement

Status: Open.

#3713 In nf-core/tools;

· jfy133 opened on Aug 15, 2025

Update rich-click version to 1.9

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

good-first-issue

infrastructure

Status: Open.

#3710 In nf-core/tools;

· mirpedrol opened on Aug 12, 2025

Consolidate Docker publishing workflows

Status: Open.

#3709 In nf-core/tools;

· edmundmiller opened on Aug 12, 2025

<code>nf-core modules patch</code> fails in the presence of Vim swap files

bugSomething isn't workingSomething isn't working

Status: Open.

#3708 In nf-core/tools;

· erikrikarddaniel opened on Aug 11, 2025

Use outputDir in nf-core pipelines

Status: Open.

Enhancement

#3707 In nf-core/tools;

· edmundmiller opened on Aug 8, 2025

· 

3.4.0

nf-core pipelines bump-version correct output tabs for .nf-core.yml

bugSomething isn't workingSomething isn't working

Status: Open.

#3704 In nf-core/tools;

· vagkaratzas opened on Aug 7, 2025

Switch to "main" as default for <code>NF_CORE_MODULES_DEFAULT_BRANCH</code>

enhancement

Status: Open.

#3703 In nf-core/tools;

· imLew opened on Aug 6, 2025

Update AWS Mega Test CI workflow to use new variables for GPU and ARM Megatests

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

Enhancement

#3692 In nf-core/tools;

· edmundmiller opened on Jul 29, 2025

· 

3.4.0

Remove single-end from modules template

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#3691 In nf-core/tools;

· SPPearce opened on Jul 29, 2025