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Pull requests: nf-core/tools

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Pull requests list

Pipeline version consistency check
#3643 opened Jun 26, 2025 by ningyuxin1999 • Draft
4 tasks
Try xdist (again)
#3635 opened Jun 23, 2025 by mashehu Loading…
WIP: Refactor pipeline downloads command download nf-core download WIP Work in progress
#3634 opened Jun 23, 2025 by ErikDanielsson • Draft
3 of 10 tasks
@ErikDanielsson
1
Support modules with exec: blocks
#3633 opened Jun 20, 2025 by muffato Loading…
1 of 4 tasks
1
Enable parsing of multi-line config values
#3629 opened Jun 18, 2025 by MatthiasZepper Loading…
3 tasks done
5
Add .nf-test folder to prettierignore list
#3625 opened Jun 17, 2025 by jonasscheid Loading…
4 tasks
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
feat: nf-core modules bump-version supports specifying the toolkit
#3608 opened Jun 5, 2025 by nh13 Loading…
4 tasks
11
Download pipelines with authenticated GH API calls
#3607 opened Jun 5, 2025 by jpfeuffer Loading…
1 of 4 tasks
3
Refactor module lint tests awaiting-feedback
#3592 opened May 30, 2025 by edmundmiller • Draft
4 tasks
3.4.0
@edmundmiller
2
Update conda env sorting awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again.
#3591 opened May 30, 2025 by edmundmiller Loading…
4 tasks
3.4.0
1
@edmundmiller
12
Issues/3466 Move away from Gitpod
#3569 opened May 14, 2025 by JulianFlesch • Draft
2 of 4 tasks
3.4.0
38
Add opt-in feature gpu
#3562 opened May 10, 2025 by ningyuxin1999 Loading…
1 of 5 tasks
1
19
Template: Don't fail CI on latest-everything
#3543 opened Apr 24, 2025 by mashehu Loading…
16
Fix modules meta.yml file structure
#3532 opened Apr 7, 2025 by mirpedrol Loading…
5 of 7 tasks
9
Add docker downloads
#3517 opened Mar 26, 2025 by nikhil • Draft
4 tasks
4
Moved all singularity-related download functions into a new file download nf-core download
#3509 opened Mar 25, 2025 by muffato • Draft
4 tasks
@muffato
42
Move WorkflowRepo class into seperate file, since it will be shared b…
#3506 opened Mar 24, 2025 by MatthiasZepper • Draft
1 of 4 tasks
8
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.4.0
10
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
ProTip! Exclude everything labeled bug with -label:bug.