Repositories list

• RectChr

  Public
  Multi-level visualization of genomic statistical variables on rectangular chromosomes

  Perl

  •

  Other

  •11•95•0•0•Updated Sep 11, 2025Sep 11, 2025

• VCF2Dis

  Public
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

  populationpopulation-geneticsboostrap+ 2distance-matrixnj-tree

  C++

  •

  MIT License

  •21•97•1•0•Updated Aug 27, 2025Aug 27, 2025

• LDBlockShow

  Public
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  gwasldld-block+ 2linkage-disequilibriald-heatmap

  Perl

  •

  MIT License

  •44•187•8•1•Updated Jul 5, 2025Jul 5, 2025

• PopLDdecay

  Public
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

  populationld-decaylinkage-disequilibrium+ 1decay

  C++

  •

  MIT License

  •53•195•8•0•Updated Aug 15, 2024Aug 15, 2024

• BamDeal

  Public
  BamDeal: a comprehensive toolkit for bam manipulation

  bam-coveragebam-statistics

  C++

  •

  MIT License

  •20•54•2•1•Updated Dec 21, 2022Dec 21, 2022

• fqcheck

  Public
  fqcheck: A new simple and efficient software to stat base and quality distribution of fq file

  C++

  •3•1•0•0•Updated Feb 17, 2022Feb 17, 2022

• FxTools

  Public
  FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation

  C++

  •

  MIT License

  •12•31•2•0•Updated Feb 16, 2022Feb 16, 2022

• Reseqtools

  Public
  A Toolkit for analyzing next-generation DNA Re-Sequencing data

  GNU General Public License v2.0

  •29•84•3•0•Updated Feb 15, 2022Feb 15, 2022

• gcaPDA

  Public
  gamete cell assisted chromosome-scale phased diploid assembler

  Perl

  •1•5•0•0•Updated Mar 26, 2021Mar 26, 2021

• RRSelection

  Public
  RRSelection: A linkage disequilibrium method to detect selection region across population VCF

  C++

  •

  MIT License

  •2•14•0•0•Updated Feb 11, 2019Feb 11, 2019

• soap2bam

  Public
  soap2bam: A efficient software tools to convert soap to bam format

  0•2•0•0•Updated Jun 13, 2018Jun 13, 2018

• BamCoverage

  Public
  BamCoverage: A efficient software tools to calculate every site depth of genome based bam files

  3•6•0•0•Updated Jun 13, 2018Jun 13, 2018

• BamSplit

  Public
  A efficient software tools to split Bam form all chromosome together to each chr one bam

  2•5•0•0•Updated Jun 13, 2018Jun 13, 2018

• SoapNewCov

  Public
  SoapNewCov: A efficient software tools to Calculate site depth of genome based soap

  0•2•0•0•Updated Mar 15, 2018Mar 15, 2018