Repositories list

• PanCell-eQTL

  Public
  A mutli-tissue, multi-ancestry sc-eQTL atlas

  R

  •0•1•0•0•Updated Aug 29, 2025Aug 29, 2025

• GCTA

  Public
  C++

  •

  GNU General Public License v3.0

  •1•4•0•0•Updated Jul 22, 2025Jul 22, 2025

• gsMap

  Public
  Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

  gwasspatial-datastatistical-genetics+ 3spatial-data-analysisbioinformatics-toolspatial-transcriptomics

  Python

  •

  MIT License

  •15•177•1•0•Updated Jul 16, 2025Jul 16, 2025

• SMR

  Public
  C++

  •

  GNU General Public License v2.0

  •0•3•0•0•Updated Jul 9, 2025Jul 9, 2025

• SlurmSlim

  Public
  Optimize Slurm Job Scheduling with MCP-Based Memory Estimation

  Python

  •0•2•0•0•Updated Mar 23, 2025Mar 23, 2025

• adview

  Public
  Adata Viewer: Head/Less/Shape h5ad file in terminal

  Rust

  •

  MIT License

  •0•11•0•0•Updated Mar 19, 2025Mar 19, 2025

• OSCA

  Public
  C++

  •

  Other

  •0•1•0•0•Updated Mar 17, 2025Mar 17, 2025

• MeDuSA

  Public
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.

  single-cell

  R

  •3•44•0•0•Updated Feb 20, 2025Feb 20, 2025

• MeDuSAJ

  Public
  C++

  •0•3•0•0•Updated Jan 14, 2025Jan 14, 2025

• depthmate

  Public
  calculate reference and alternate base depth in tumor-normal pair matched bam

  Rust

  •0•2•0•0•Updated Dec 30, 2024Dec 30, 2024

• .github

  Public
  JianYang Lab

  0•1•0•0•Updated Dec 21, 2024Dec 21, 2024

• SMR-Portal

  Public
  SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.

  Vue

  •

  MIT License

  •3•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• gsmr2

  Public
  The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics to test for a putative causal association between two phenotypes (e.g., a modifiable risk factor and a disease) based on a multi-SNP model

  R

  •1•17•1•0•Updated Apr 26, 2024Apr 26, 2024

• gsmr

  Public
  R

  •0•1•0•0•Updated Jan 31, 2024Jan 31, 2024

• crussmap

  Public
  crussmap is a faster tool to convert genome coordinates between difference reference assemblies.

  rustbioinformatics

  Rust

  •

  MIT License

  •1•20•0•0•Updated May 4, 2023May 4, 2023

• rsam

  Public
  Random sampler for text-based data in Rust using reservoir sampling algorithm.

  sampledata-science

  Rust

  •

  GNU General Public License v3.0

  •0•9•1•0•Updated Apr 12, 2023Apr 12, 2023