Repositories list

• dx-toolkit

  Public
  DNAnexus platform client libraries

  Python

  •

  Apache License 2.0

  •88•97•43•35•Updated Aug 14, 2025Aug 14, 2025

• gsrs-play-dist

  Public
  Build artifacts for deployment of our branch of GSRS

  JavaScript

  •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

• dxfuse

  Public
  FUSE filesystem for the DNAnexus storage system

  Go

  •

  Apache License 2.0

  •5•14•2•2•Updated Aug 12, 2025Aug 12, 2025

• dxCompiler

  Public
  WDL and CWL compiler for the DNAnexus platform

  wdlcwldnanexus+ 1compiler

  Scala

  •

  Apache License 2.0

  •18•34•19•3•Updated Jul 4, 2025Jul 4, 2025

• wdlTools

  Public
  WDL tools for parsing, type-checking, and more

  Scala

  •

  Apache License 2.0

  •7•26•19•1•Updated Apr 11, 2025Apr 11, 2025

• dxda

  Public
  CLI tool to manage the download of large quantities of files from DNAnexus

  Go

  •

  Apache License 2.0

  •8•17•7•1•Updated Apr 8, 2025Apr 8, 2025

• dxScala

  Public
  Java

  •

  Apache License 2.0

  •0•2•0•0•Updated Apr 7, 2025Apr 7, 2025

• dx-streaming-upload

  Public
  The DNAnexus incremental upload script packaged as an Ansible Role

  Python

  •10•14•4•3•Updated Apr 7, 2025Apr 7, 2025

• packer-plugin-oracle

  Public
  Packer plugin for Oracle Builder

  Go

  •

  Mozilla Public License 2.0

  •18•0•0•0•Updated Apr 2, 2025Apr 2, 2025

• cwlScala

  Public
  Scala

  •

  Apache License 2.0

  •1•4•2•1•Updated Mar 31, 2025Mar 31, 2025

• BrowserBoxScan

  Public template
  🌀 Browse the web from a web page. Remote browser isolation. For security, privacy and more! By https://dosyago.com

  JavaScript

  •

  Other

  •392•2•0•0•Updated Oct 21, 2024Oct 21, 2024

• oidc-example-app

  Public
  Example web application to showcase the OIDC flow

  JavaScript

  •1•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• UKB_RAP

  Public
  Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

  gwaswdlukbiobank

  Jupyter Notebook

  •

  MIT License

  •58•190•1•0•Updated Jul 30, 2024Jul 30, 2024

• dnanexus-example-applets

  Public
  Tutorials for app(let) developers:

  pythontutorialdnanexus-platform+ 1dnanexus-sdk

  Python

  •

  Other

  •13•24•3•3•Updated Jul 16, 2024Jul 16, 2024

• OpenBio

  Public
  Jupyter Notebook

  •

  MIT License

  •33•85•2•2•Updated Jan 16, 2024Jan 16, 2024

• dxWDL

  Public
  Workflow Description Language compiler for the DNAnexus platform

  wdlworkflow-description-language

  Java

  •

  Apache License 2.0

  •16•41•6•3•Updated Jun 29, 2023Jun 29, 2023

• IndexTools

  Public archive
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.

  Python

  •

  MIT License

  •3•17•13•2•Updated Aug 19, 2022Aug 19, 2022

• igv-js

  Public
  Lightweight html5 version of the Integrative Genomics Viewer

  JavaScript

  •

  MIT License

  •242•0•0•0•Updated Sep 2, 2020Sep 2, 2020

• docker-promtool

  Public
  Minimal docker image for running the promtool utility for validating prometheus config files.

  Dockerfile

  •

  Apache License 2.0

  •12•29•0•1•Updated May 11, 2020May 11, 2020