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A tool for generating consensus long-read assemblies for bacterial genomes
📓 eLabFTW is the most popular open source electronic lab notebook for research labs.
A filesystem-like contents manager for multiple backends in Jupyter
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
Python composable command line interface toolkit
Determining tandem repeat lengths using raw nanopore signals.
Timothée Flutre's personal R package (+ parts from other contributors)
Simple bacterial assembly and annotation pipeline
Spawn Nextflow pipelines from Jupyterhub and configure them interactively
Project code for BioHackathon Europe 2024.
Fine-tuning & Reinforcement Learning for LLMs. 🦥 Train Qwen3, Llama 4, DeepSeek-R1, Gemma 3, TTS 2x faster with 70% less VRAM.
ai-generated apps , full stack + generative UI
This repository showcases various advanced techniques for Retrieval-Augmented Generation (RAG) systems. RAG systems combine information retrieval with generative models to provide accurate and cont…
Statistical Rethinking (2nd ed.) with NumPyro
Statistical Rethinking with PyTorch and Pyro
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell d…
Learn R in simple and easy steps starting from basic to advanced concepts with examples. If you are trying to understand the R programming language as a beginner, this tutorial will give you enough…
The best way we learn anything is by practice and exercise questions. These exercises help you to improve your R programming coding skills
Dataframes powered by a multithreaded, vectorized query engine, written in Rust
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
Run Rstudio Server in a conda environment