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Feature Request: spaceranger segmented_outputs compatibility

enhancementNew feature or requestNew feature or request

Status: Open.

#9965 In satijalab/seurat;

· HeidiLischer opened on Jun 26, 2025

BUG: Setting Idents() with a Column Name Matching a DimReduc Causes Cryptic Error

bugSomething isn't workingSomething isn't working

Status: Open.

#9962 In satijalab/seurat;

· nilesh-iiita opened on Jun 24, 2025

Unexcepted performance issue in LeverageScore.default()

Status: Open.

#9957 In satijalab/seurat;

· hrobertfrost opened on Jun 23, 2025

BUG: FindVariableFeatures gives simpleLoess warnings

bugSomething isn't workingSomething isn't working

Status: Open.

#9946 In satijalab/seurat;

· Enterprise-J opened on Jun 13, 2025

Bug: <code>RunPCA()</code> warning — features requested have not been scaled after SCTransform

Status: Open.

#9942 In satijalab/seurat;

· BenjaminDEMAILLE opened on Jun 13, 2025

BUG: Use of FindClusters(cluster.name = ) leads to incorrect factor leveling

bugSomething isn't workingSomething isn't working

Status: Open.

#9940 In satijalab/seurat;

· jdrnevich opened on Jun 10, 2025

BUG: LeverageScore was different into run interactively and automately

bugSomething isn't workingSomething isn't working

Status: Open.

#9927 In satijalab/seurat;

· honghh2018 opened on Jun 4, 2025

BUG: 5.3.0 Seurat::UMAPPlot error

bugSomething isn't workingSomething isn't working

Status: Open.

#9909 In satijalab/seurat;

· Liripo opened on May 28, 2025

BUG: Test failure in test_integration5.R

bugSomething isn't workingSomething isn't working

Status: Open.

#9907 In satijalab/seurat;

· bruc opened on May 25, 2025

IntegrateLayers ~calculating error in Seurat: cannot not allocate vector of size 847.6 Gb

Status: Open.

#9901 In satijalab/seurat;

· ssun5HFHS opened on May 22, 2025

BUG: Mishandling of escape characters in gene names by FeatureScatter

bugSomething isn't workingSomething isn't working

Status: Open.

#9900 In satijalab/seurat;

· Hanliconius opened on May 21, 2025

BUG: Conversion between Assay5 to Assay is broken

bugSomething isn't workingSomething isn't working

Status: Open.

#9899 In satijalab/seurat;

· jemorlanes opened on May 21, 2025