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Unpin scipy when statmodels>0.14.4 is released

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#1323 In sgkit-dev/sgkit;

· tomwhite opened on Jun 24, 2025

Incorrect allele ordering in plink

Status: Open.

#1315 In sgkit-dev/sgkit;

· jeromekelleher opened on May 20, 2025

read_plink returns 'nan' strings for sample_ids

bugSomething isn't workingSomething isn't working

Status: Open.

#1314 In sgkit-dev/sgkit;

· jeromekelleher opened on May 20, 2025

Support lazy <code>save_dataset</code> ?

Status: Open.

#1298 In sgkit-dev/sgkit;

· rajwanir opened on Mar 31, 2025

The best way to append samples to a dataset?

Status: Open.

#1295 In sgkit-dev/sgkit;

· rajwanir opened on Mar 26, 2025

Citation

Status: Open.

#1293 In sgkit-dev/sgkit;

· fouerghi opened on Mar 12, 2025

Add separate function for Watterson's theta

Status: Open.

#1279 In sgkit-dev/sgkit;

· percyfal opened on Dec 5, 2024

Diversity calculations on windowed datasets generate lots of unmanaged memory

Status: Open.

#1278 In sgkit-dev/sgkit;

· percyfal opened on Dec 5, 2024

Windowing fails for datasets where contigs lack variant sites

bugSomething isn't workingSomething isn't working

Status: Open.

#1268 In sgkit-dev/sgkit;

· percyfal opened on Oct 10, 2024

Dask 2024.8.1 and later is very slow

performance

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#1267 In sgkit-dev/sgkit;

· tomwhite opened on Oct 7, 2024

Unclear how to overwrite a dataset

Status: Open.

#1243 In sgkit-dev/sgkit;

· hyanwong opened on Jul 26, 2024

No page at https://sgkit-dev.github.io

Status: Open.

#1242 In sgkit-dev/sgkit;

· hyanwong opened on Jul 26, 2024