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stephenturner/qqman
pval truncate

Is there a way to show the truncated log10pval on the manhattan plot like this? the two lines // like that. Image
  • Afreen89
  • Opened 
    on Mar 18
  • #74

stephenturner/qqman
0

  • junchcb
  • Opened 
    on Apr 23, 2024
  • #73

stephenturner/qqman
Error in UseMethod("qq") : no applicable method for 'qq' applied

When do qq(gwasResults$P), got an error below. Error in UseMethod( qq ) : no applicable method for qq applied to an object of class c( double , numeric )
  • littletiger311
  • Opened 
    on Mar 8, 2024
  • #71

stephenturner/qqman
x ticks not in the center of chromosome

Dear Stephen, I found the tick of x axis is not in the center of chromosome，I guess it is possible that the uneven distribution of SNP markers on chromosome. Is there an parameter to set the position of ...
  • zpliu1126
  • Opened 
    on Mar 13, 2023
  • #68

stephenturner/qqman
overlap labels in Manhattan plot

Is there a way to avoid overlap labels for the top SNPs? Thank you
  • catheriz
  • Opened 
    on Mar 8, 2023
  • #67

stephenturner/qqman
Width of manhattan plot

How can I make the manhattan plot wider?
  • neginmb
  • Opened 
    on May 25, 2021
  • #66

stephenturner/qqman
Add flag to control annotation text size

Could you add a flag to control the text size when annotating top hits?
  • oyhel
  • Opened 
    on Jun 23, 2018
  • #63

stephenturner/qqman
Column CHR not found!

Hello, I ve been trying to plot some sample data with the manhattan() function and it keeps saying this: library(qqman) manhattan(ETtrait1polygenicv4) Error in manhattan(ETtrait1polygenicv4) : Column ...
  • geneticsmcgill
  • 4
  • Opened 
    on May 14, 2018
  • #62

stephenturner/qqman
Increase font size of annotation

I am trying to annotate top hits above a certain p-value (annotateTop=T). Is there a way to increase/adjust font size of the annotated text? manhattan Thank you for the amazing tool!
  • jsreddy82
  • 2
  • Opened 
    on Nov 3, 2017
  • #61

stephenturner/qqman
Error due to very very small and/or NA P values

library(qqman) gwasResults$P[1] = 1e-400 manhattan(gwasResults) Error message: Error in plot.window(...) : need finite ylim values
  • zjuwhw
  • 1
  • Opened 
    on Oct 18, 2017
  • #60
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