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tool wishlist

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#228 In stjudecloud/workflows;

· a-frantz opened on May 12, 2025

revise contributing docs

Status: Open.

#225 In stjudecloud/workflows;

· a-frantz opened on Apr 8, 2025

Refactor <code>sort_star_input.py</code>

Status: Open.

#222 In stjudecloud/workflows;

· adthrasher opened on Feb 26, 2025

Revisit pyright type checks

Status: Open.

#217 In stjudecloud/workflows;

· adthrasher opened on Feb 12, 2025

add depth to our test coverage

Status: Open.

#204 In stjudecloud/workflows;

· a-frantz opened on Jan 29, 2025

Investigate memory usage for combining methylation subsets

Status: Open.

#194 In stjudecloud/workflows;

· adthrasher opened on Dec 18, 2024

Add a read trimming step to alignment workflows

enhancementNew feature or requestNew feature or request

Status: Open.

#179 In stjudecloud/workflows;

· a-frantz opened on Aug 27, 2024

Add intentional pre and post checks for file emptiness

Status: Open.

#177 In stjudecloud/workflows;

· a-frantz opened on Aug 7, 2024

Fragility in workflows around malformed/missing RG records

Status: Open.

#172 In stjudecloud/workflows;

· a-frantz opened on Jul 15, 2024

more dynamically allocated mem

enhancementNew feature or requestNew feature or request

Status: Open.

#171 In stjudecloud/workflows;

· a-frantz opened on Jul 15, 2024

Tasks that take both pos/name sorted probably need different resources

enhancementNew feature or requestNew feature or request

Status: Open.

#170 In stjudecloud/workflows;

· a-frantz opened on Jul 15, 2024

Expose more parameters of tools

good first issueGood for newcomersGood for newcomers

Status: Open.

#168 In stjudecloud/workflows;

· a-frantz opened on Jul 15, 2024