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| 1 | + G W A S G E N E V I E W E R - 0.2.0 |
| 2 | + a GWT composite for combined visualization GWAS plots and gene models. |
| 3 | + |
| 4 | + ////////////////////////////////////////////////////////////////////////////// |
| 5 | + |
| 6 | + License MIT (see included LICENSE) |
| 7 | + Original Author Ümit Seren |
| 8 | + |
| 9 | + |
| 10 | + Web Site - |
| 11 | + Github Repo. https://github.com/timeu/GWASGeneViewer |
| 12 | + Bug Tracking - |
| 13 | + Test Suite - |
| 14 | + |
| 15 | + |
| 16 | + ////////////////////////////////////////////////////////////////////////////// |
| 17 | + |
| 18 | + ACKNOWLEDGMENT & THIRD PARTY LIBRARIES |
| 19 | + |
| 20 | + - processing.js by John Resig (http://processingjs.org) |
| 21 | + - Google Web Toolkit (GWT) by Google (http://code.google.com/webtoolkit/) |
| 22 | + - jbrowse by GMOD (http://jbrowse.org) |
| 23 | + - dygraphs by Dan Vanderkam (http://dygraphs.com/) |
| 24 | + |
| 25 | + ////////////////////////////////////////////////////////////////////////////// |
| 26 | + |
| 27 | + INTRODUCTION |
| 28 | + |
| 29 | + GWASGeneViewer is a simple Google Web Toolkit (GWT) widget for a combined |
| 30 | + visualization of Genome Wide Association Mapping (GWAS) plots and gene models. |
| 31 | + |
| 32 | + The widget uses the a modified version of dygraphs's GWT widget and the GeneViewer |
| 33 | + widget (see required 3rd party libraries). |
| 34 | + The required GeneViewer widget uses processing.js to visualize the gene models |
| 35 | + and a modified version of dygraphs is used to visualize the GWAS plots as |
| 36 | + scatterplots. |
| 37 | + |
| 38 | + The widget combines these two visualization tools (GeneViewer and Dygraph) |
| 39 | + so that the genes are aligned with the GWAS plots and wire interactions in either |
| 40 | + of these widgets together. |
| 41 | + |
| 42 | + This means if the user zooms into a region in the GWAS plot the gene model view |
| 43 | + will also be zoomed into the same region. This is only one example of interactions |
| 44 | + which are supported by this widget (see USAGE for more examples). |
| 45 | + |
| 46 | + |
| 47 | + |
| 48 | + ////////////////////////////////////////////////////////////////////////////// |
| 49 | + |
| 50 | + PLATFORM AND BROWSER COMPATIBILITY |
| 51 | + |
| 52 | + The GeneViewer widget uses processing.js to visualize the gene models. |
| 53 | + The Dygraph widget uses dygraphs.js to visualize the GWAS plots. |
| 54 | + Both widgets rely on the HTML5 canvas element. For browser compatiblity refer to |
| 55 | + the documentation of both libraries. |
| 56 | + |
| 57 | + In general this widget works with browser that support the HTML5 canvas element. |
| 58 | + In case of Microsoft's IE this only applies to the Internet Explorer 9.0 |
| 59 | + |
| 60 | + ////////////////////////////////////////////////////////////////////////////// |
| 61 | + |
| 62 | + USAGE |
| 63 | + |
| 64 | + to be written |
| 65 | + |
| 66 | + ////////////////////////////////////////////////////////////////////////////// |
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