Here are
10 public repositories
matching this topic...
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Updated
Jun 1, 2025
Python
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Updated
Nov 18, 2023
Python
Classify output of AmpliconArchitect to detect types of focal amplifications present
Updated
Jul 11, 2025
Python
A pipeline for assembling and annotation of vectors
Updated
Aug 19, 2021
Nextflow
Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.
Updated
Jul 15, 2025
Python
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Updated
May 30, 2024
Shell
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
Updated
Dec 27, 2022
Python
Visualizing taxa of different amplicon primer sets
Updated
Mar 28, 2019
Jupyter Notebook
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