Discovering known and novel miRNAs from small RNA sequencing data

A database for microRNA-gene/protein expression correlation in cancer.

An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data

This script implements a Selenium WebDriver to automate the access to miRDB - MicroRNA Target Prediction and Functional Study Database and search for microRNAs targets/seeds present in custom mRNA sequences.

microRNA validation using Spark framework

An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer

Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism

Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

"Conserved microRNAs and Flipons Shape Gene Expression during Development by Altering Promoter Conformations" International Journal of Molecular Sciences 24, no. 5: 4884

Model to evaluate the distribution of Regular Expressions (REs) across a ranked sequence list.

miRNA-related resources

miRNA Discovery Project : simple, easy-to-use, rule-based miRNA candidate discovery with multithread acceleration

Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)

Build SQLite tables of microRNAs and Transcription Factors-gene Correlations

An R package to impute miRNA activity using protein-coding gene expression

Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"

A Bio2BEL package for miRBase (http://www.mirbase.org)

Code for the PeerJ paper (cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer)

Integrated tool for hairpins extraction from RNA Sequences