Plant phenotyping with image analysis

Plant Phenotyping APP

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

The official repository for the paper: Scalable learning for bridging the species gap in image-based plant phenotyping.

Regression in Convolutional Neural Network applied to Plant Leaf Count

We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals

[ISPRS P&RS] Unsupervised shape-aware SOM down-sampling for plant point clouds

Greenotyper is a plant phenotyping tool used for detecting multiple plants on an image and measuring size and greenness of each individual plant over time.

Main repo for the running/training on the dataset presented in 'High-fidelity Wheat Plant Reconstruction using 3D Gaussian Splatting and Neural Radiance Fields'

Code for taking measurements from images of an object on top of a calibration pattern.

Batch process FLIR radiometric (thermal) JPEGs and generate clean lossless images with consistent scale and palette

Phenome 2020 Digital Phenotyping workshop materials

Modular, Scalable Phenomic Data Processing Pipelines

A modular software architecture for Automatic Plant Phenotyping

Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping

A repository with notes from the seminar given on 28 November 2018.

Detecting phenotypic traits such as leaf and collar count in soybean plants using deep learning

A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species

Application for hyper/multispectral image analysis

Workflow for seed phenotyping of USDA rice minicore population, including statistical analysis, and GWAS (Modified from Marrano and Moyers, 2022)