issues Search Results · repo:3dmol/3Dmol.js language:"Jupyter Notebook"
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in3dmol/3Dmol.js (press backspace or delete to remove)Problem
I use 3dmol for interactive learning content in the live sciences where the molecules are embedded in a longer
explanation or lecture script. Whenever the mouse is inside a molecule viewer, scrolling ...
enhancement
tilman-schieber
- 2
- Opened 9 days ago
- #830
Is your feature request related to a problem? Please describe. Marimo is a new interactive python environment. I would
like to use py3Dmol inside it.
Describe the solution you d like I would like to use ...
enhancement
ajasja
- 5
- Opened 11 days ago
- #829
I have been playing with transforming models, i.e., rotating and translating them and I noticed that the surfaces that I
generated prior to the coordinates transformation do not move. I could re-do the ...
enhancement
JavierSanchez-Utges
- 2
- Opened 16 days ago
- #828
Hi, I would like to dynamically transform structure in 3Dmol.js. I was wondering if there are any methods implemented
for this. I would like to apply this to the structure models, rather than moving the ...
enhancement
- 5
- Opened 16 days ago
- #827
I want to create a representation of the ligand in the protein active site like this:
img width= 649 alt= Image src= https://github.com/user-attachments/assets/e5339be2-0127-4138-9f47-8ea279637a39 /
...
gedeck
- Opened 24 days ago
- #826
To Reproduce Visit the 3Dmol homepage in Chrome. I realize this is likely going to end up a works on my machine
scenario, but I tried on multiple machines and with all kinds of browsers, and it is very ...
bug
Schmoho
- 2
- Opened 26 days ago
- #825
[:LABEL:]
Description The unit cell is drawn as a line. The line has a 1-pixel width, and it is barely visible on a normal monitor
(screenshot below) and becomes pretty much invisible on a hidpi display. ...
ceriottm
- 1
- Opened on Mar 15
- #824
Describe the bug When using fog effects with 3Dmol.js for small molecules (e.g., benzene), the fog doesn t appear at
all. Customization of fog parameters (color, density, near/far clipping) seems to have ...
bug
dxdc
- Opened on Feb 18
- #823
Describe the bug When using the grid viewer, more than 18 models starts to result in truncation of the view (shown at 20
below). At larger numbers (40 shown below) the viewer stretches in weird ways.
...
bug
coltonbh
- Opened on Feb 18
- #822
Describe the bug I am trying to use 3Dmol to read an xyz file and draw an atomic structure. My code can correctly read
the xyz file and generate the correct MLModel object, but the web page cannot display ...
bug
loilisxka
- 5
- Opened on Feb 11
- #821
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