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@BD2KGenomics

UC Santa Cruz Genomics Institute - Computational Genomics Lab

Developers in the Computational Genomics Lab at the UC Santa Cruz Genomics Institute

Popular repositories Loading

  1. toil-rnaseq toil-rnaseq Public

    UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline

    Python 40 10

  2. toil-scripts toil-scripts Public

    Toil workflows for common genomic pipelines

    Python 33 18

  3. protect protect Public

    Python 29 13

  4. cgcloud cgcloud Public

    Image and VM management for Jenkins, Spark and Mesos clusters in EC2

    Python 22 17

  5. cgl-docker-lib cgl-docker-lib Public

    Python 21 20

  6. conductor conductor Public

    Efficient, distributed downloads of large files from S3 to HDFS using Spark.

    Scala 17 7

Repositories

Showing 10 of 67 repositories
  • dcc-ops Public

    The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.

    Shell 2 Apache-2.0 4 51 2 Updated Dec 8, 2022
  • dcc-dockstore-tool-runner Public

    A Dockstore tool designed to perform file downloads from Redwood, run another Dockstore tool, and then upload to Redwood.

    Python 1 Apache-2.0 2 5 6 Updated Jul 29, 2022
  • protect Public
    Python 29 Apache-2.0 13 33 5 Updated Oct 6, 2021
  • toil-rnaseq Public

    UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline

    Python 40 Apache-2.0 10 11 1 Updated Aug 17, 2020
  • cgcloud Public

    Image and VM management for Jenkins, Spark and Mesos clusters in EC2

    Python 22 17 49 3 Updated Jul 24, 2020
  • 23andMe-brca-exchange Public

    Get expert, curated information about your 23andMe results in the BRCA1 and 2 regions

    Python 5 3 0 2 Updated Oct 14, 2019
  • toil-scripts Public

    Toil workflows for common genomic pipelines

    Python 33 Apache-2.0 18 48 6 Updated Oct 3, 2019
  • cgl-docker-lib Public
    Python 21 20 35 1 Updated Jul 3, 2019
  • dockstore_workflow_snps Public

    Workflow for variant callers MuSE, MuTect, SomaticSniper, and Pindel

    Common Workflow Language 2 1 0 0 Updated May 16, 2018
  • hgvm Public
    Python 2 5 5 0 Updated May 7, 2018
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