A high-performance library for compressed ndarrays, with a flexible computational engine

A Python wrapper for the extremely fast Blosc compression library

MinIO is a high-performance, S3 compatible object store, open sourced under GNU AGPLv3 license.

Fast and scalable indexing of grids

STEM microscope simulator

A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation

Transparent optimized reading of n-dimensional Blosc2 slices for h5py

Course reader for MatSci 144

Declarative visualization library for Python

⚡ Datoviz: high-performance GPU scientific data visualization C/C++/Python library

Main repository for Vispy

A possible schema for cryoET geometry metadata

GitHub Copilot extension for JupyterLab

Powerful and versatile visualization for Python.

Remote Frame Buffer for Jupyter

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

Use MyST Markdown directly in Jupyter Lab

RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension

Digital Twin Microscope

Diffraction Integration for Advanced Light Sources

Python library to handle Scanning Probe Microscopy Images. Can read nanoscan .xml data, Bruker AFM images, Nanonis SXM files as well as iontof images(ITA, ITM and ITS).

A curated list of awesome computational cryo-EM methods.

Pixel based Medipix geometry with digitiser for simulating Monte Carlo and charge transport simulation as well as chip electronics.

Geant4 toolkit for the simulation of the passage of particles through matter - NIM A 506 (2003) 250-303

Definitions of the NeXus Standard File Structure and Contents

Harmonize electron microscopy data and metadata for research data management using NeXus

NOMAD lets you manage and share your materials science data in a way that makes it truly useful to you, your group, and the community.