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@DecodeGenetics

DecodeGenetics

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  1. graphtyper graphtyper Public

    Population-scale genotyping using pangenome graphs

    C++ 179 20

  2. Ratatosk Ratatosk Public

    Hybrid error correction of long reads using colored de Bruijn graphs

    C++ 100 7

  3. svimmer svimmer Public

    Structural variant merging tool

    Python 49 9

  4. BamHash BamHash Public

    C++ 37 8

  5. popSTR popSTR Public

    PopSTR - A Population based microsatellite genotyper

    C++ 32 9

  6. LRS_SV_sets LRS_SV_sets Public

    VCF files of SVs using long-read sequencing (LRS).

    22 2

Repositories

Showing 10 of 31 repositories
  • weaver Public

    Short read pangenome reference mapper

    0 0 0 0 Updated Mar 13, 2025
  • nf-weaver Public

    Nextflow workflows for mapping reads with weaver

    Nextflow 0 0 0 0 Updated Mar 11, 2025
  • graphtyper Public

    Population-scale genotyping using pangenome graphs

    C++ 179 MIT 20 66 0 Updated Jan 9, 2025
  • gnonadd Public
    R 1 0 0 0 Updated Dec 18, 2024
  • PalssonEtAl_Nature_2024 Public

    Supplementary data for Nature publication: Complete human recombination maps

    0 0 0 0 Updated Nov 1, 2024
  • Ratatosk Public

    Hybrid error correction of long reads using colored de Bruijn graphs

    C++ 100 BSD-2-Clause 7 1 0 Updated Sep 27, 2024
  • svimmer Public

    Structural variant merging tool

    Python 49 9 5 1 Updated Aug 23, 2024
  • Stefanssonetal-Nature-Genetics-2024 Public
    R 2 MIT 0 1 0 Updated Jun 19, 2024
  • Emblask Public

    Dual assembly pipeline for ONT and Illumina reads

    Nextflow 0 0 0 0 Updated Mar 6, 2024
  • popSTR Public

    PopSTR - A Population based microsatellite genotyper

    C++ 32 GPL-3.0 9 5 0 Updated Oct 23, 2023
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