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@DeepGraphLearning

MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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  1. torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1.5k 202

  2. ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 517 70

  3. GMNN Public

    Graph Markov Neural Networks

    Python 408 99

  4. GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 282 29

  5. NBFNet Public

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 206 30

  6. ConfGF Public

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 165 36

Repositories

Showing 10 of 49 repositories
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

    Python 12 1 1 1 Updated Mar 12, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

    CSS 5 MIT 0 0 0 Updated Feb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 517 MIT 70 2 0 Updated Feb 3, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

    Python 127 MIT 12 1 1 Updated Feb 3, 2025
  • S3F Public

    Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)

    Python 30 MIT 2 2 0 Updated Dec 3, 2024
  • MATH60630A_2024A Public
    SCSS 0 0 0 0 Updated Nov 21, 2024
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

    Python 48 Apache-2.0 6 6 0 Updated Aug 21, 2024
  • torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1,480 Apache-2.0 202 110 (1 issue needs help) 11 Updated Aug 12, 2024
  • graphvite Public

    GraphVite: A General and High-performance Graph Embedding System

    C++ 1,245 Apache-2.0 154 53 0 Updated Jun 14, 2024
  • esm-s Public

    Structure-Informed Protein Language Model

    Python 29 4 3 0 Updated Feb 15, 2024
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