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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology
README.md

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 16 9

  2. SBOL-visual SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 33 16

  3. pySBOL3 pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 39 17

  4. sboljs3 sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 6 1

  5. SBOL-utilities SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 16 26

  6. SBOL-examples SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 3 4

Repositories

Showing 10 of 55 repositories
  • SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    SynBioDex/SBOL-utilities’s past year of commit activity
    JavaScript 16 MIT 26 109 (2 issues need help) 12 Updated Mar 4, 2025
  • pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    SynBioDex/pySBOL3’s past year of commit activity
    Python 39 MIT 17 45 (4 issues need help) 6 Updated Feb 27, 2025
  • Excel-utilities Public
    SynBioDex/Excel-utilities’s past year of commit activity
    Python 1 BSD-3-Clause 0 5 0 Updated Feb 27, 2025
  • sbol_factory Public

    The SBOLFactory provides a mechanism for automatically generating an interactive, object-oriented API from a declarative data model specification encoded in OWL.

    SynBioDex/sbol_factory’s past year of commit activity
    Python 6 MIT 3 16 1 Updated Feb 26, 2025
  • Excel-to-SBOL Public
    SynBioDex/Excel-to-SBOL’s past year of commit activity
    Python 4 BSD-3-Clause 8 25 0 Updated Feb 25, 2025
  • pySBOL2 Public

    A pure Python implementation of the SBOL standard.

    SynBioDex/pySBOL2’s past year of commit activity
    Python 21 Apache-2.0 7 29 1 Updated Feb 13, 2025
  • tyto Public

    Use ontology terms in your Python application

    SynBioDex/tyto’s past year of commit activity
    Python 19 Apache-2.0 4 22 0 Updated Feb 13, 2025
  • SBOLCanvas Public
    SynBioDex/SBOLCanvas’s past year of commit activity
    HTML 12 Apache-2.0 6 26 0 Updated Feb 9, 2025
  • SBOL-Notebooks Public

    A repository containing Jupyter Notebooks for SBOL

    SynBioDex/SBOL-Notebooks’s past year of commit activity
    Jupyter Notebook 0 1 17 3 Updated Feb 4, 2025
  • SbolStandardWebsite Public
    SynBioDex/SbolStandardWebsite’s past year of commit activity
    TeX 4 CC0-1.0 3 12 0 Updated Feb 4, 2025
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