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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology
README.md

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 16 9

  2. SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 33 16

  3. pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 39 17

  4. sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 6 1

  5. SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 16 26

  6. SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 3 4

Repositories

Showing 10 of 55 repositories
  • pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 39 MIT 17 45 (4 issues need help) 3 Updated Mar 7, 2025
  • SBOL-Validator Public

    A web application to validate SBOL files

    HTML 8 Apache-2.0 3 15 1 Updated Mar 6, 2025
  • Excel-to-SBOL Public
    Python 4 BSD-3-Clause 8 25 0 Updated Mar 5, 2025
  • SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 16 MIT 26 109 (2 issues need help) 12 Updated Mar 4, 2025
  • Excel-utilities Public
    Python 1 BSD-3-Clause 0 5 0 Updated Feb 27, 2025
  • sbol_factory Public

    The SBOLFactory provides a mechanism for automatically generating an interactive, object-oriented API from a declarative data model specification encoded in OWL.

    Python 6 MIT 3 16 1 Updated Feb 26, 2025
  • pySBOL2 Public

    A pure Python implementation of the SBOL standard.

    Python 21 Apache-2.0 7 29 1 Updated Feb 13, 2025
  • tyto Public

    Use ontology terms in your Python application

    Python 19 Apache-2.0 4 22 0 Updated Feb 13, 2025
  • SBOLCanvas Public
    HTML 12 Apache-2.0 6 26 0 Updated Feb 9, 2025
  • SBOL-Notebooks Public

    A repository containing Jupyter Notebooks for SBOL

    Jupyter Notebook 0 1 17 3 Updated Feb 4, 2025
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