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UCD-SERG/serocalculator

clarify units in enteric fever vignette

For the article and vignette, it may be worth clarifying what the units are for serologic responses (in another vignette you use antibody concentrations in figure). For the enteric fever data for example ...

documentation

• d-morrison
·
• Opened 
  7 days ago
·
• #416

UCD-SERG/serocalculator

boxplot alpha in sim vignette

Very minor but for the visualize data boxplots, the alpha is so low and point size so small that it s difficult to see the points. - JA

documentation

• d-morrison
·
• Opened 
  7 days ago
·
• #414

UCD-SERG/serocalculator

decompose boxplot methods for pop_data

in simulate_xsectionalData.qmd , there are two geom_boxplot() code chunks that could be decomposed into one or two functions.

feature

• d-morrison
·
• Opened 
  7 days ago
·
• #413

UCD-SERG/serocalculator

document how to work with censored data in serocalculator

• d-morrison
·
• Opened 
  15 days ago
·
• #402

UCD-SERG/serocalculator

handle infinite assay values

• d-morrison
·
• Opened 
  15 days ago
·
• #401

UCD-SERG/serocalculator

Create function for stratified results plot

Create a function by decomposing the graph in enteric_fever_example.Rmd Image

• kristinawlai
·
• Opened 
  16 days ago
·
• #397

UCD-SERG/serocalculator

add documentation pages for object classes

see tibble::tbl_df for examples

documentation

• d-morrison
·
• Opened 
  19 days ago
·
• #395

UCD-SERG/serocalculator

Update function names

Update function and dataset names for new terminology - curve -- sr - est.incidence() -- estimate_scr()

modernization

• kristinawlai
·
• Opened 
  23 days ago
·
• #389

UCD-SERG/serocalculator

Add article on how to calculate noise parameters for your data

Add article to assist users in producing their own noise parameters and better understand how they are calculated

feature

• kristinawlai
·
• Opened 
  26 days ago
·
• #387

UCD-SERG/serocalculator

in `sim_pop_data()`, `n_mcmc_samples` seems mis-named

- [ ] determine the correct interpretation of this parameter - [ ] rename it appropriately

documentation

• d-morrison
·
• Opened 
  on Feb 11
·
• #388

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