🧬 gget enables efficient querying of genomic reference databases

Arc Virtual Cell Atlas

For fine-tuning Enformer using paired WGS & gene expression data

Alignment-based gene expression quantification

✂️ Deep learning-based splice site predictor that improves spliced alignments

Pipeline for generating reference and perturbed sequences for input into predictive models.

List of software/websites/databases/other stuff for genome engineering

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.