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Starred repositories

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A safer zlib

Rust 358 18 Updated Mar 4, 2025

Programming language that targets the Nintendo Entertainment System

C++ 686 24 Updated Aug 2, 2024

free autopilot for sailboats written in python supporting signalk

Python 247 101 Updated Jul 13, 2024

An attempt at proxying vscode remote shell backend through cluster login nodes.

Python 11 2 Updated Sep 23, 2024

The Big List of Naughty Strings is a list of strings which have a high probability of causing issues when used as user-input data.

Python 46,991 2,151 Updated Apr 18, 2024

A conda-smithy repository for pado.

1 1 Updated Dec 28, 2024

Action for generating attestations for workflow artifacts

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Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

HTML 112 30 Updated Nov 12, 2024

A full English translation of the stock Japanese PlayStation Broadband Navigator (PSBBN) software with large drive support

Shell 153 13 Updated Mar 9, 2025

Sample docker stacks for LaminDB.

Jupyter Notebook 4 Updated Feb 17, 2024

Scaling Single Cell Analysis to Millions of Cells

C++ 185 19 Updated Mar 9, 2025

Convert ecw files to tiff

Dockerfile 12 4 Updated Jan 30, 2024

data load tool (dlt) is an open source Python library that makes data loading easy 🛠️

Python 3,302 228 Updated Mar 10, 2025

A conda-smithy repository for flask-caching.

1 5 Updated Feb 23, 2025

Pyramids of map tiles in a single file on static storage

TypeScript 2,224 134 Updated Mar 4, 2025

a dataloader to work with large single cell datasets from lamindb

Jupyter Notebook 21 6 Updated Mar 7, 2025

Manage projects & references.

Python 2 Updated Jan 18, 2025

A reference manager.

Python 2 Updated Jan 7, 2025

Single-cell epigenomics analysis tools

Python 248 31 Updated Dec 28, 2024

a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex ima…

Python 46 5 Updated Feb 4, 2025

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

Python 97 27 Updated Mar 7, 2025

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Python 250 9 Updated Feb 13, 2025

scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

Python 42 3 Updated Mar 7, 2025
Python 10 1 Updated Jan 29, 2025

A container registry for the scverse

Dockerfile 8 Updated Sep 10, 2024

Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly multiplexed immunohistochemistry data. Docs available here: ht…

Python 17 Updated Mar 10, 2025

Feature-rich Python implementation of the tximport package for gene count estimation.

Python 34 2 Updated Feb 26, 2025

Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases

Python 23 3 Updated Nov 16, 2024

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

Rust 178 16 Updated Mar 3, 2025

Deep probabilistic analysis of single-cell and spatial omics data

Python 1,342 381 Updated Mar 10, 2025
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