Starred repositories
Programming language that targets the Nintendo Entertainment System
free autopilot for sailboats written in python supporting signalk
An attempt at proxying vscode remote shell backend through cluster login nodes.
The Big List of Naughty Strings is a list of strings which have a high probability of causing issues when used as user-input data.
Action for generating attestations for workflow artifacts
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
A full English translation of the stock Japanese PlayStation Broadband Navigator (PSBBN) software with large drive support
Sample docker stacks for LaminDB.
data load tool (dlt) is an open source Python library that makes data loading easy 🛠️
A conda-smithy repository for flask-caching.
Pyramids of map tiles in a single file on static storage
a dataloader to work with large single cell datasets from lamindb
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex ima…
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly multiplexed immunohistochemistry data. Docs available here: ht…
Feature-rich Python implementation of the tximport package for gene count estimation.
Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Deep probabilistic analysis of single-cell and spatial omics data