Write workflows scripting the GitHub API in JavaScript

Fortune's sweep algorithm for voronoi tesselation and delaunay triangulation

Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 2, and other large language models.

Basic cookiecutter template for R projects

Singularity container for the PETcofold/PETfold tools

Map RNA-seq data for visualization in browser

Functional Associations using Variational Autoencoders

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

🦄 A curated list of privacy & security-focused software and services

This is the development home of the workflow management system Snakemake. For general information, see

Resume/CV template using RMarkdown and LaTeX

R package for inferring multi-variate/multi-attribute Gaussian graphical models

Presentation Ninja 幻灯忍者 · 写轮眼

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

Easily install and load packages from the tidyverse

Shiny gadget for labeling points on ggplot

ggplot2: elegant graphics for data analysis

R for data science: a book

Differential expression of RNA-seq data using the Negative Binomial

A pipeline for the computational evaluation of RNA-Seq data

GFF and GVF specification documents

A former repository of the beamer theme for the typesetting of thesis defense presentations at the Masaryk University in Brno. Now migrated to the URL below.

Scala 2 compiler and standard library. Scala 2 bugs at https://github.com/scala/bug; Scala 3 at https://github.com/scala/scala3

matplotlib: plotting with Python

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Statistical data visualization in Python