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@bcbio

Blue Collar Bioinformatics

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

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  1. bcbioR Public

    R package with well defined templates for most common pipelines

    R 6 3

  2. bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    Python 996 354

  3. cloudbiolinux Public

    Forked from chapmanb/cloudbiolinux

    CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

    Python

  4. bcbio-utils Public

    Helper scripts for bcbio-nextgen

    Python 3

Repositories

Showing 10 of 24 repositories
  • rnaseq-reports Public

    code templates and training materials to perform downs-tream analysis from nf-core RNAseq pipelines

    R 1 0 0 1 Updated Mar 4, 2025
  • bcbioR Public

    R package with well defined templates for most common pipelines

    R 6 3 30 1 Updated Mar 4, 2025
  • bcbioR-test-data Public

    repository to host small dataset for bcbioR package

    R 0 MIT 0 0 0 Updated Feb 17, 2025
  • nextflow-subsample Public

    subsampling fastq files for downstream samples

    Nextflow 0 MIT 0 1 0 Updated Dec 20, 2024
  • resources Public

    files used regularly in downstream analysis of NGS data

    0 MIT 1 0 0 Updated Oct 2, 2024
  • smrnaseq Public Forked from nf-core/smrnaseq

    A small-RNA sequencing analysis pipeline

    Nextflow 0 MIT 126 0 1 Updated Sep 4, 2024
  • bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    Python 996 MIT 354 129 3 Updated Aug 24, 2024
  • bcbio.github.io Public

    Blue Collar Bioinformatics website

    HTML 9 3 0 0 Updated Apr 30, 2024
  • hivdrm Public

    Detect HIV Drug Resitant Mutations using amplicon sequencing data

    Python 1 MIT 1 0 0 Updated May 20, 2023
  • bcbio_validations Public

    Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

    HTML 31 11 0 0 Updated Feb 12, 2022
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