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Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.8k 602

  2. picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 999 372

  3. cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 359

Repositories

Showing 10 of 1349 repositories
  • dsp-appsec-infrastructure-apps Public

    This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.

    Python 6 BSD-3-Clause 2 0 2 Updated Mar 11, 2025
  • rawls Public

    Rawls service for DSDE

    Scala 26 BSD-3-Clause 4 0 13 Updated Mar 11, 2025
  • depmap-portal Public

    Code for the DepMap portal at depmap.org

    Python 7 BSD-2-Clause 1 0 14 Updated Mar 11, 2025
  • warp Public

    WDL Analysis Research Pipelines

    WDL 210 BSD-3-Clause 102 5 18 Updated Mar 11, 2025
  • cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1,012 BSD-3-Clause 359 743 47 Updated Mar 11, 2025
  • dig-dug-portal Public
    Vue 2 BSD-3-Clause 1 1 0 Updated Mar 11, 2025
  • gatk Public

    Official code repository for GATK versions 4 and up

    Java 1,778 602 1,237 (8 issues need help) 132 Updated Mar 11, 2025
  • hidive Public
    Rust 0 BSD-3-Clause 0 5 1 Updated Mar 11, 2025
  • BEClust3D Public
    Jupyter Notebook 0 0 0 8 Updated Mar 11, 2025
  • picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 999 MIT 372 203 22 Updated Mar 11, 2025
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